Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.5e-234 815.1 417 100.0
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 6.8e-163 577.8 420 72.9
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.7e-161 573.2 420 73.8
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.7e-161 573.2 420 73.8
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 4.9e-161 571.6 418 73.7
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 6.3e-161 571.2 418 73.4
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 1.4e-160 570.1 420 72.9
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.8e-160 569.7 419 73.5
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 3.1e-160 568.9 421 73.4
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 5.4e-160 568.2 420 73.3
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 9.2e-160 567.4 420 73.8
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.6e-159 566.6 420 72.4
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.7e-159 565.8 416 74.0
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.3e-158 563.5 420 73.3
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 6.6e-158 561.2 421 72.0
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 6.6e-158 561.2 422 72.5
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.9e-157 559.7 421 71.7
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 9.5e-157 557.4 421 71.7
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.0e-150 537.3 416 71.6
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.9e-133 479.9 395 66.3
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 4.9e-129 465.3 442 59.3
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 1.7e-126 456.8 423 61.2
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 3.0e-126 456.1 421 60.8
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 3.9e-126 455.7 420 60.5
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 3.3e-125 452.6 427 59.5
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 1.2e-124 450.7 419 60.1
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 8.1e-124 448.0 345 68.1
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 1.1e-123 447.6 424 61.1
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.4e-123 447.2 419 60.1
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 1.8e-123 446.8 421 58.9
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.8e-123 446.8 432 58.6
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 1.8e-123 446.8 421 61.3
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 2.4e-123 446.4 421 60.1
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 3.1e-123 446.0 420 60.5
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 3.1e-123 446.0 420 60.5
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 3.1e-123 446.0 417 61.2
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 2.0e-122 443.4 382 63.1
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.6e-122 443.0 419 58.7
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.6e-122 443.0 426 58.7
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 2.6e-122 443.0 419 60.4
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 3.4e-122 442.6 344 67.4
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 4.4e-122 442.2 426 58.9
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 4.4e-122 442.2 417 59.5
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 5.8e-122 441.8 405 61.0
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 7.6e-122 441.4 416 60.3
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 9.9e-122 441.0 417 59.2
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.7e-121 440.3 430 59.8
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.7e-121 440.3 410 60.5
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 6.4e-121 438.3 416 59.4
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.4e-120 437.2 417 59.2
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.4e-120 437.2 424 59.9
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.4e-120 437.2 418 59.1
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.9e-120 436.8 410 59.0
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 4.2e-120 435.6 421 59.4
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 5.4e-120 435.3 416 59.6
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 7.1e-120 434.9 409 59.9
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 7.1e-120 434.9 406 59.6
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.2e-119 434.1 413 59.8
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.6e-119 433.7 421 59.1
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 2.1e-119 433.3 385 61.3
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 3.5e-119 432.6 420 59.0
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 6.0e-119 431.8 423 58.2
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 6.0e-119 431.8 421 59.1
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 7.8e-119 431.4 426 57.5
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.0e-118 431.0 443 56.0
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 1.0e-118 431.0 418 56.5
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 2.3e-118 429.9 418 59.1
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 3.0e-118 429.5 359 63.0
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 5.1e-118 428.7 349 64.2
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 5.1e-118 428.7 419 56.3
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 6.6e-118 428.3 344 65.7
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 8.7e-118 427.9 375 62.9
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 8.7e-118 427.9 425 56.9
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 8.7e-118 427.9 426 58.0
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.9e-117 426.8 414 58.5
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 1.9e-117 426.8 423 56.7
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 1.9e-117 426.8 419 59.2
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 3.3e-117 426.0 399 59.9
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 3.3e-117 426.0 350 65.7
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 3.6e-116 422.5 421 58.7
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 6.2e-116 421.8 359 63.5
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 1.2e-114 417.5 323 66.9
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 3.4e-114 416.0 344 62.5
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 5.8e-114 415.2 423 58.2
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 7.6e-114 414.8 405 59.0
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.7e-113 413.7 361 61.2
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.9e-113 412.9 392 58.9
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 4.9e-113 412.1 420 55.5
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.1e-112 411.0 379 58.8
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 2.4e-112 409.8 360 61.9
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 7.1e-112 408.3 385 57.4
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.7e-111 406.4 371 59.8
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.5e-111 406.0 352 61.4
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 7.9e-111 404.8 385 57.7
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.5e-109 400.6 364 59.9
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.5e-109 399.8 411 56.0
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 2.5e-109 399.8 414 54.3
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 3.3e-109 399.4 410 54.9
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.1e-108 396.7 466 53.2
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 8.1e-108 394.8 349 61.0
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 8.1e-108 394.8 406 56.2
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.1e-107 394.4 318 64.5
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.8e-107 393.7 413 55.7
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 5.3e-107 392.1 396 56.6
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 1.4e-104 384.0 393 54.5
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 2.4e-104 383.3 445 51.5
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 4.2e-104 382.5 422 54.7
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 7.1e-104 381.7 402 55.7
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 1.2e-103 380.9 420 51.0
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 2.1e-103 380.2 418 52.6
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 2.7e-103 379.8 446 51.3
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 2.7e-103 379.8 316 63.0
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 2.7e-103 379.8 446 51.3
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.5e-103 379.4 396 53.8
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 6.0e-103 378.6 321 62.6
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 6.0e-103 378.6 321 62.6
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 2.3e-102 376.7 446 51.1
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.0e-102 376.3 409 53.3
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 3.9e-102 375.9 412 53.6
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 5.1e-102 375.6 409 53.3
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 2.0e-98 363.6 363 57.6
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 1.0e-97 361.3 373 54.7
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.3e-97 360.9 319 62.1
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 7.9e-95 351.7 354 57.9
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 4.8e-92 342.4 396 50.3
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 1.8e-86 323.9 305 59.0
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 6.7e-86 322.0 323 58.5
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 9.7e-85 318.2 355 53.8
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.4e-80 304.3 255 63.1
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.2e-80 303.1 303 57.8
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 7.2e-80 302.0 303 57.8
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 6.7e-78 295.4 322 48.4
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 6.3e-76 288.9 373 44.8
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 2.4e-75 287.0 317 48.3
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.1e-72 278.1 234 65.0
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 3.7e-68 263.1 363 45.7
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.6e-63 247.7 287 52.3
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.7e-60 237.7 297 49.5
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 3.1e-59 233.4 299 44.1
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 6.5e-57 225.7 183 66.1
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 9.4e-56 221.9 262 52.3
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 5.9e-50 202.6 208 54.8
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.0e-49 201.8 206 55.8
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.3e-49 200.7 208 56.2
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 7.2e-48 195.7 145 68.3
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 7.3e-32 142.5 114 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 1.2e-31 141.7 168 48.2
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-30 138.3 137 55.5
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 6.8e-30 136.0 128 57.0
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.6e-29 134.0 72 83.3
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-28 131.3 72 80.6
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.1e-27 128.6 239 43.5
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 9.2e-27 125.6 73 79.5
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-24 117.5 165 46.7
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 4.3e-24 116.7 104 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 2.8e-23 114.0 100 53.0
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 6.8e-22 109.4 126 43.7
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 4.6e-18 96.7 75 61.3
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 9.5e-16 89.0 156 39.1
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 1.6e-15 88.2 96 54.2
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 2.0e-13 81.3 46 84.8
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 2.6e-13 80.9 168 34.5
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 8.4e-12 75.9 75 57.3
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 1.1e-11 75.5 46 78.3
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 7.8e-10 69.3 54 64.8
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 3.9e-09 67.0 80 46.2
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 4.7e-07 60.1 28 100.0
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 4.7e-07 60.1 28 100.0
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 4.7e-07 60.1 28 100.0
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.1e-06 58.9 94 40.4
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 4.0e-06 57.0 29 89.7


User provided reference genes

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