Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 7.6e-52 207.2 131 100.0
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 2.1e-30 136.0 130 60.0
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 2.6e-28 129.0 131 58.0
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 9.9e-28 127.1 130 56.9
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.3e-27 126.7 130 55.4
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 8.4e-27 124.0 130 55.4
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.4e-26 123.2 130 55.4
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 2.1e-25 119.4 130 53.8
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 1.3e-24 116.7 130 53.8
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 1.3e-24 116.7 130 53.8
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 5.1e-24 114.8 130 53.1
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 5.1e-24 114.8 130 53.1
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 5.1e-24 114.8 130 53.1
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 1.5e-23 113.2 130 53.1
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 4.9e-19 98.2 130 46.9
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 4.9e-19 98.2 130 46.9
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 1.4e-18 96.7 130 46.9
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 2.5e-18 95.9 124 46.0
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 2.5e-18 95.9 124 46.0
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 2.5e-18 95.9 124 46.0
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 4.3e-15 85.1 131 45.8
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 8.4e-11 70.9 121 35.5
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.5e-09 65.5 128 35.2
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 7.9e-09 64.3 132 34.1
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.3e-08 63.5 121 35.5
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.3e-08 63.5 145 35.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.9e-08 62.0 134 32.1
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 8.7e-08 60.8 61 50.8
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.1e-07 60.5 136 35.3
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 1.1e-07 60.5 129 31.8
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 1.9e-07 59.7 120 35.8
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 2.5e-07 59.3 125 32.8
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 4.3e-07 58.5 128 32.8
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 4.3e-07 58.5 121 33.9
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.7e-07 58.2 126 35.7
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 5.7e-07 58.2 124 34.7
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 5.7e-07 58.2 126 34.9
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 9.7e-07 57.4 129 30.2
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 9.7e-07 57.4 129 33.3
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 1.6e-06 56.6 127 36.2
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 1.6e-06 56.6 128 32.0
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 2.2e-06 56.2 128 33.6
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 2.2e-06 56.2 136 32.4
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 2.2e-06 56.2 125 32.8
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 2.2e-06 56.2 54 50.0
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.7e-06 55.5 129 31.8
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.7e-06 55.5 131 33.6
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 6.3e-06 54.7 58 46.6
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 6.3e-06 54.7 51 52.9
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 6.3e-06 54.7 134 33.6
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 8.2e-06 54.3 43 60.5
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 8.2e-06 54.3 127 33.1
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 8.2e-06 54.3 127 33.1


User provided reference genes

Program Settings