Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 0.0e+00 2624.0 1285 100.0
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 0.0e+00 1681.0 1287 67.9
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 0.0e+00 1635.5 1287 66.7
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 0.0e+00 1632.1 1287 66.7
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 0.0e+00 1617.4 1286 65.2
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 0.0e+00 1545.8 1279 64.5
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 0.0e+00 1536.5 1279 64.0
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 0.0e+00 1530.8 1276 63.9
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 0.0e+00 1530.8 1283 63.8
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 0.0e+00 1520.8 1282 63.7
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 0.0e+00 1501.9 1290 62.9
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 0.0e+00 1428.3 1123 66.5
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 0.0e+00 1343.2 1293 56.3
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 3.6e-255 885.9 1366 39.7
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 8.5e-249 864.8 1384 39.0
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 8.3e-244 848.2 1382 39.6
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 1.6e-242 844.0 1385 37.5
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 7.3e-240 835.1 1379 37.8
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 2.9e-236 823.2 1404 37.7
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 3.2e-227 793.1 1412 36.5
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 7.8e-226 788.5 1448 36.9
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 6.6e-225 785.4 1421 36.6
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 1.9e-224 783.9 1391 36.9
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 1.4e-222 777.7 1375 36.9
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 2.3e-217 760.4 1395 36.0
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 7.3e-216 755.4 1387 35.5
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.5e-213 747.7 1362 36.0
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.9e-212 743.4 1397 35.4
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 2.1e-210 737.3 1377 37.3
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 6.2e-207 725.7 1366 36.4
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.4e-205 719.5 1424 34.8
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 8.7e-201 705.3 1395 35.1
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 9.6e-200 701.8 1297 36.5
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 3.6e-199 699.9 1235 37.7
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 3.4e-197 693.3 1397 34.4
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 7.9e-194 682.2 1360 35.4
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 6.7e-193 679.1 1380 34.9
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 8.7e-193 678.7 1392 33.3
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 9.6e-192 675.2 1358 35.7
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.4e-190 671.4 1382 34.2
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 1.8e-190 671.0 1361 33.9
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 2.4e-190 670.6 1432 33.6
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 2.4e-190 670.6 1392 34.2
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 4.5e-189 666.4 1361 35.2
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 3.2e-187 660.2 1387 33.0
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 7.1e-187 659.1 1315 34.1
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 2.1e-186 657.5 1315 34.1
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 3.7e-183 646.7 1392 32.8
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 8.2e-183 645.6 1402 33.2
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 6.9e-182 642.5 1383 32.4
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 9.0e-182 642.1 1358 34.6
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 3.4e-181 640.2 517 64.8
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 3.8e-180 636.7 1362 32.9
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 3.0e-177 627.1 1392 34.4
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 3.0e-177 627.1 1379 33.3
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 1.0e-172 612.1 1343 31.0
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 1.1e-171 608.6 1239 33.0
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 2.1e-170 604.4 1413 31.3
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 7.9e-170 602.4 1390 31.9
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.3e-169 601.7 1384 31.4
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 6.7e-169 599.4 1369 32.7
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 1.1e-163 582.0 1328 32.7
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 1.4e-163 581.6 1391 31.4
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 3.2e-163 580.5 1402 32.1
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 4.1e-158 563.5 1355 31.4
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 1.2e-157 562.0 1381 30.3
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 2.9e-156 557.4 1214 31.9
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 2.7e-154 550.8 1297 31.2
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 8.2e-151 539.3 1348 31.5
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 9.7e-144 515.8 1108 33.8
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 9.1e-142 509.2 1363 30.4
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 6.5e-140 503.1 1176 32.5
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.0e-137 494.2 1127 31.7
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 8.8e-137 492.7 1379 29.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 1.2e-136 492.3 1381 29.8
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 4.5e-133 480.3 1176 32.1
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 2.8e-130 471.1 1470 29.2
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 8.6e-124 449.5 1040 34.3
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 5.2e-121 440.3 1501 27.0
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 2.5e-107 394.8 999 30.8
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 9.5e-107 392.9 974 29.4
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 2.2e-103 381.7 827 32.9
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 3.2e-102 377.9 396 50.3
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 7.3e-99 366.7 1340 26.8
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 3.4e-96 357.8 1321 26.4
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 1.4e-86 325.9 1335 24.9
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 4.2e-86 324.3 931 28.0
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 5.1e-84 317.4 404 44.1
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 6.6e-84 317.0 460 40.4
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 2.5e-83 315.1 628 36.3
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 5.3e-81 307.4 440 39.8
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.8e-76 292.4 363 46.8
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.8e-76 292.4 352 46.9
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 3.1e-73 281.6 801 29.2
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 9.6e-67 260.0 727 29.0
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 8.2e-66 256.9 400 40.0
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.1e-61 242.3 359 42.9
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.7e-60 237.3 268 48.9
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.9e-59 235.7 295 46.1
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 6.7e-52 210.7 1264 23.3
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.3e-51 208.4 239 48.5
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 7.4e-51 207.2 450 32.2
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 1.1e-43 183.3 374 34.0
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 3.1e-41 175.3 639 27.4
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.5e-38 165.6 203 46.3
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.4e-36 159.8 267 35.2
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 2.8e-34 152.1 521 25.0
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 4.5e-32 144.8 598 25.8
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 7.7e-32 144.1 353 28.6
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 5.0e-31 141.4 271 31.0
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 7.2e-30 137.5 642 23.5
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.3e-26 126.7 122 51.6
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 1.0e-23 117.1 298 32.2
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 4.0e-20 105.1 167 33.5
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 4.4e-19 101.7 205 28.3
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 4.1e-17 95.1 194 30.9
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 5.4e-17 94.7 208 27.9
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.3e-15 90.1 185 29.2
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.8e-13 82.4 269 27.5
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.8e-12 79.7 57 61.4
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 3.7e-10 72.0 49 63.3
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 4.1e-09 68.6 182 27.5
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 4.1e-09 68.6 249 24.1
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 2.0e-08 66.2 199 27.1


User provided reference genes

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