Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 4.9e-260 900.6 450 100.0
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 4.8e-223 777.7 451 87.4
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.6e-218 762.7 449 85.7
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 3.9e-217 758.1 450 86.0
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 2.0e-216 755.7 451 85.8
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 7.4e-216 753.8 451 85.6
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 3.7e-215 751.5 451 85.4
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 2.7e-210 735.3 474 80.8
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 3.6e-210 734.9 481 80.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 9.7e-208 726.9 410 88.5
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 2.2e-207 725.7 480 80.0
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 2.3e-201 705.7 387 90.2
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 3.8e-196 688.3 476 75.6
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 7.3e-179 630.9 450 72.9
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 2.8e-178 629.0 426 75.8
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 1.1e-177 627.1 414 77.1
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 8.9e-177 624.0 454 71.8
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 5.8e-176 621.3 414 76.8
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.3e-175 620.2 393 78.1
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 2.2e-175 619.4 448 72.8
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.1e-174 617.1 393 77.6
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 1.1e-174 617.1 418 74.4
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 1.4e-174 616.7 470 69.4
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 4.1e-174 615.1 395 77.5
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 4.1e-174 615.1 444 71.2
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 7.0e-174 614.4 449 72.4
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 9.2e-174 614.0 434 73.5
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 1.2e-173 613.6 447 70.7
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.6e-173 613.2 430 74.2
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 2.1e-173 612.8 415 74.0
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 2.1e-173 612.8 461 70.9
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 2.1e-173 612.8 397 77.3
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.7e-173 612.5 449 71.9
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 1.7e-172 609.8 415 75.2
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 2.3e-172 609.4 432 72.7
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 1.5e-171 606.7 418 74.9
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 2.5e-171 605.9 396 76.0
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 4.3e-171 605.1 392 78.1
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 7.3e-171 604.4 424 72.6
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 7.3e-171 604.4 451 70.3
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 9.5e-171 604.0 392 76.5
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 1.6e-170 603.2 449 69.5
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 2.8e-170 602.4 401 75.1
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 4.7e-170 601.7 392 76.0
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 4.7e-170 601.7 392 76.0
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 8.1e-170 600.9 386 77.5
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 2.3e-169 599.4 444 71.4
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 5.2e-169 598.2 392 75.8
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 5.2e-169 598.2 409 73.6
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 3.4e-168 595.5 434 70.5
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 3.4e-168 595.5 386 76.7
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 5.8e-168 594.7 458 67.7
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 9.2e-166 587.4 420 71.9
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 3.9e-164 582.0 422 71.1
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 3.3e-163 578.9 374 77.0
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 2.8e-162 575.9 427 69.1
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 5.2e-161 571.6 485 62.9
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 6.8e-161 571.2 425 70.1
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.2e-160 570.5 417 70.3
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.2e-160 570.5 372 76.3
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.7e-159 566.6 373 76.4
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 2.2e-159 566.2 409 70.7
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 4.2e-158 562.0 354 78.5
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.2e-157 560.5 392 73.0
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 2.3e-156 556.2 397 72.3
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 2.6e-152 542.7 377 73.2
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 2.9e-151 539.3 530 57.9
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 3.2e-150 535.8 400 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 7.1e-150 534.6 407 65.6
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 4.6e-149 531.9 449 65.0
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.0e-148 530.8 399 69.9
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 6.6e-148 528.1 392 69.6
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 4.3e-147 525.4 402 68.2
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.6e-146 523.5 344 77.6
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 9.9e-144 514.2 389 65.0
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 3.2e-142 509.2 422 63.0
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 7.1e-142 508.1 404 65.6
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.1e-141 506.5 482 59.5
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 6.0e-141 505.0 404 66.8
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 2.5e-139 499.6 410 66.8
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 3.4e-136 489.2 423 62.6
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 4.5e-136 488.8 443 61.2
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 9.9e-136 487.6 391 66.0
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 1.3e-135 487.3 422 64.2
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 5.1e-132 475.3 449 58.8
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 6.7e-132 474.9 309 78.3
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 8.7e-132 474.6 405 64.0
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.6e-128 463.0 440 60.0
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.2e-126 456.1 357 68.1
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 6.3e-122 441.8 390 63.6
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.1e-117 426.8 324 69.4
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 2.5e-115 419.9 400 54.5
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 7.2e-110 401.7 394 54.6
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 5.1e-108 395.6 466 48.7
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 4.4e-107 392.5 243 80.2
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.0e-100 369.8 257 73.9
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 5.3e-97 359.0 256 72.7
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 3.5e-88 329.7 228 75.4
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.8e-82 309.3 250 68.4
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.5e-80 302.8 247 68.0
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 1.4e-76 291.2 204 70.1
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 3.5e-72 276.6 245 64.5
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 7.3e-70 268.9 254 64.2
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 7.3e-70 268.9 254 64.2
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 7.3e-70 268.9 254 64.2
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 6.8e-68 262.3 184 70.1
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 8.9e-68 261.9 530 36.0
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 5.8e-67 259.2 184 69.0
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.4e-65 254.6 172 75.6
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 4.1e-65 253.1 184 67.9
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 9.2e-65 251.9 257 62.3
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.2e-64 251.5 155 80.6
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.5e-62 243.8 146 82.2
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 3.3e-62 243.4 153 77.1
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 4.3e-62 243.0 325 47.1
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 4.3e-62 243.0 157 77.1
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 4.1e-57 226.5 174 65.5
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 4.3e-54 216.5 132 77.3
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.4e-50 202.6 162 63.6
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.9e-42 176.4 140 65.7
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 1.1e-41 175.3 129 67.4
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.7e-40 170.6 101 84.2
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 4.0e-36 156.8 128 70.3
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.2e-35 155.2 119 68.9
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.9e-34 150.6 130 60.8
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 2.1e-32 144.4 93 79.6
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 2.1e-32 144.4 99 77.8
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 2.1e-29 134.4 144 50.7
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.4e-27 127.1 74 77.0
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 7.1e-25 119.4 121 54.5
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 3.5e-24 117.1 72 77.8
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.0e-20 103.6 86 58.1
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 2.2e-18 97.8 62 72.6
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.6e-16 91.7 73 64.4
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 4.6e-16 90.1 165 37.6
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 3.7e-13 80.5 180 36.7
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 8.2e-13 79.3 57 68.4
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 6.9e-12 76.3 132 40.2
CARHR128200 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.2e-11 75.5 67 68.7
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 2.3e-07 61.2 85 42.4


User provided reference genes

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