Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G12910 Aethionema arabicum HOM05D000123 ORTHO05D000064 1.2e-46 189.5 98 100.0
C08p06760 Brassica napus HOM05D000123 ORTHO05D000064 2.3e-13 79.0 125 46.4
BcaB04g17554 Brassica carinata HOM05D000123 ORTHO05D000064 2.0e-12 75.9 124 44.4
Aa31sc481G10 Aethionema arabicum HOM05D000123 ORTHO05D000064 2.6e-12 75.5 113 46.9
BcaC07g37249 Brassica carinata HOM05D000123 ORTHO05D000064 4.4e-12 74.7 125 44.8
A08p06010 Brassica napus HOM05D000123 ORTHO05D000064 4.4e-12 74.7 125 44.8
BolC8t47519H Brassica oleracea HOM05D000123 ORTHO05D000064 4.4e-12 74.7 125 44.8
BraA08t32602Z Brassica rapa HOM05D000123 ORTHO05D000064 4.4e-12 74.7 125 44.8
Thhalv10012033m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 1.3e-11 73.2 132 42.4
A10p06710 Brassica napus HOM05D000123 ORTHO05D000064 2.2e-11 72.4 123 45.5
BcaC08g42921 Brassica carinata HOM05D000123 ORTHO05D000064 4.8e-11 71.2 120 45.0
C06p01610 Brassica napus HOM05D000123 ORTHO05D000064 4.8e-11 71.2 120 45.0
BolC6t35292H Brassica oleracea HOM05D000123 ORTHO05D000064 4.8e-11 71.2 120 45.0
Sp1g34200 Schrenkiella parvula HOM05D000123 ORTHO05D000064 6.3e-11 70.9 133 42.1
vmacro04444 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 6.3e-11 70.9 114 43.0
Carub.0001s3579 Capsella rubella HOM05D000123 ORTHO05D000064 8.3e-11 70.5 133 40.6
Rhsim07G0227900 Rhododendron simsii HOM05D000123 ORTHO05D000064 1.8e-10 69.3 120 45.8
BcaB02g11435 Brassica carinata HOM05D000123 ORTHO05D000064 2.4e-10 68.9 126 42.9
AT1G46264 Arabidopsis thaliana HOM05D000123 ORTHO05D000064 3.1e-10 68.6 137 40.1
Actinidia27075 Actinidia chinensis HOM05D000123 ORTHO05D000064 4.1e-10 68.2 121 43.0
Gorai.010G020700 Gossypium raimondii HOM05D000123 ORTHO05D000064 5.4e-10 67.8 122 41.0
Oeu043584.1 Olea europaea HOM05D000123 ORTHO05D000064 5.4e-10 67.8 146 37.0
SalBow7G2431 Salvia bowleyana HOM05D000123 ORTHO05D000064 5.4e-10 67.8 110 47.3
Sed0008522 Sechium edule HOM05D000123 ORTHO05D000064 5.4e-10 67.8 140 37.9
CARHR036580 Cardamine hirsuta HOM05D000123 ORTHO05D000064 9.1e-10 67.0 144 38.9
Gohir.A06G019400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 9.1e-10 67.0 121 40.5
AUR62035755 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.2e-09 66.6 133 41.4
Gohir.D06G017800 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.2e-09 66.6 117 41.0
Phvul.001G022900 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 1.2e-09 66.6 138 39.1
Phvul.009G065800 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 2.7e-09 65.5 159 35.2
AL1G53230 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 3.5e-09 65.1 135 40.0
Glyma.06G040900 Glycine max HOM05D000123 ORTHO05D000064 3.5e-09 65.1 155 35.5
HanXRQChr04g0103211 Helianthus annuus HOM05D000123 ORTHO05D000064 4.5e-09 64.7 118 40.7
DCAR_019444 Daucus carota HOM05D000123 ORTHO05D000064 5.9e-09 64.3 137 36.5
VMungo1309G3097 Vigna mungo HOM05D000123 ORTHO05D000064 5.9e-09 64.3 159 35.8
SalBow6G4803 Salvia bowleyana HOM05D000123 ORTHO05D000064 7.7e-09 63.9 143 37.1
SHI08244 Sapria himalayana HOM05D000123 ORTHO05D000064 7.7e-09 63.9 114 39.5
HanXRQChr09g0268061 Helianthus annuus HOM05D000123 ORTHO05D000064 1.3e-08 63.2 127 37.0
VMungo0647G0553 Vigna mungo HOM05D000123 ORTHO05D000064 1.3e-08 63.2 148 37.8
Hma1.2p1_0360F.1_g135620 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 2.2e-08 62.4 134 38.8
Oeu012429.1 Olea europaea HOM05D000123 ORTHO05D000064 2.2e-08 62.4 142 36.6
Rhsim06G0051500 Rhododendron simsii HOM05D000123 ORTHO05D000064 2.2e-08 62.4 122 38.5
arahy.Tifrunner.gnm1.ann1.7EA4R0 Arachis hypogaea HOM05D000123 ORTHO05D000064 3.8e-08 61.6 145 36.6
Sed0011031 Sechium edule HOM05D000123 ORTHO05D000064 3.8e-08 61.6 108 44.4
DCAR_020924 Daucus carota HOM05D000123 ORTHO05D000064 5.0e-08 61.2 110 40.9
Dinv35944 Davidia involucrata HOM05D000123 ORTHO05D000064 5.0e-08 61.2 146 34.9
Lsat_1_v5_gn_1_21321 Lactuca sativa HOM05D000123 ORTHO05D000064 1.1e-07 60.1 131 36.6
arahy.Tifrunner.gnm1.ann1.M7PLWR Arachis hypogaea HOM05D000123 ORTHO05D000064 1.5e-07 59.7 145 35.9
BcaB07g33865 Brassica carinata HOM05D000123 ORTHO05D000064 1.5e-07 59.7 121 40.5
Cc10_g04530 Coffea canephora HOM05D000123 ORTHO05D000064 1.5e-07 59.7 126 37.3
Lalb_Chr11g0062591 Lupinus albus HOM05D000123 ORTHO05D000064 1.5e-07 59.7 153 35.3
Nn1g04828 Nelumbo nucifera HOM05D000123 ORTHO05D000064 1.5e-07 59.7 155 31.0
vmacro21504 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 1.5e-07 59.7 123 36.6
Lj4C60T3 Lonicera japonica HOM05D000123 ORTHO05D000064 1.9e-07 59.3 135 38.5
CsaV3_4G034470 Cucumis sativus L. HOM05D000123 ORTHO05D000064 3.2e-07 58.5 134 37.3
Lalb_Chr14g0368601 Lupinus albus HOM05D000123 ORTHO05D000064 3.2e-07 58.5 137 38.0
TAR625G1474 Trochodendron aralioides HOM05D000123 ORTHO05D000064 3.2e-07 58.5 139 33.8
GSVIVG01009477001 Vitis vinifera HOM05D000123 ORTHO05D000064 3.2e-07 58.5 131 36.6
MSTRG.24338 Avicennia marina HOM05D000123 ORTHO05D000064 4.2e-07 58.2 160 33.1
Aqoxy6G01304 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 5.5e-07 57.8 141 34.8
Eucgr.F00215 Eucalyptus grandis HOM05D000123 ORTHO05D000064 5.5e-07 57.8 133 35.3
Nitab4.5_0007012g0040 Nicotiana tabacum HOM05D000123 ORTHO05D000064 5.5e-07 57.8 71 46.5
Peaxi162Scf00010g00269 Petunia axillaris HOM05D000123 ORTHO05D000064 5.5e-07 57.8 114 37.7
MELO3C016765.2 Cucumis melo HOM05D000123 ORTHO05D000064 9.4e-07 57.0 138 38.4
Eucgr.F02327 Eucalyptus grandis HOM05D000123 ORTHO05D000064 9.4e-07 57.0 144 36.1
Lsat_1_v5_gn_4_126681 Lactuca sativa HOM05D000123 ORTHO05D000064 9.4e-07 57.0 137 33.6
HanXRQChr02g0039521 Helianthus annuus HOM05D000123 ORTHO05D000064 1.2e-06 56.6 127 37.0
Gorai.005G102000 Gossypium raimondii HOM05D000123 ORTHO05D000064 1.6e-06 56.2 140 35.7
Manes.05G174900 Manihot esculenta HOM05D000123 ORTHO05D000064 1.6e-06 56.2 151 35.1
Sabra02G0098000 Salix brachista HOM05D000123 ORTHO05D000064 1.6e-06 56.2 29 86.2
Sabra14G0018500 Salix brachista HOM05D000123 ORTHO05D000064 1.6e-06 56.2 29 86.2
THA.LOC104807099 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 1.6e-06 56.2 29 86.2
Ca_15942_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 2.1e-06 55.8 35 74.3
Atru.chr13.712 Acer truncatum HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
Cfa018081 Carpinus fangiana HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
CiPaw.15G055000 Carya illinoinensis HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
Haze_18031 Corylus avellana HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
Duzib041G0165 Durio zibethinus HOM05D000123 ORTHO05D000064 2.7e-06 55.5 146 35.6
Gohir.D01G110500 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.7e-06 55.5 145 33.1
MD08G1098200 Malus domestica HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
MD15G1080700 Malus domestica HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
Manes.18G038600 Manihot esculenta HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
Nn5g30272 Nelumbo nucifera HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
Prupe.1G433500 Prunus persica HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
QL02p004485 Quercus lobata HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
TWI56G0754 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 2.7e-06 55.5 33 78.8
MSTRG.25082 Avicennia marina HOM05D000123 ORTHO05D000064 3.6e-06 55.1 152 34.9
HanXRQChr16g0508201 Helianthus annuus HOM05D000123 ORTHO05D000064 3.6e-06 55.1 115 33.9
ClCG05G020010 Citrullus lanatus HOM05D000123 ORTHO05D000064 4.7e-06 54.7 29 82.8
Glyma.04G039600 Glycine max HOM05D000123 ORTHO05D000064 4.7e-06 54.7 29 82.8
Glyma.14G083700 Glycine max HOM05D000123 ORTHO05D000064 4.7e-06 54.7 151 32.5
Gohir.A05G203500 Gossypium hirsutum HOM05D000123 ORTHO05D000064 4.7e-06 54.7 29 82.8
Gorai.009G213100 Gossypium raimondii HOM05D000123 ORTHO05D000064 4.7e-06 54.7 29 82.8
Lj1g0028101 Lotus japonicus HOM05D000123 ORTHO05D000064 4.7e-06 54.7 29 82.8
Lalb_Chr08g0245381 Lupinus albus HOM05D000123 ORTHO05D000064 4.7e-06 54.7 152 34.9
Oeu049990.1 Olea europaea HOM05D000123 ORTHO05D000064 4.7e-06 54.7 139 35.3
Potri.002G124800 Populus trichocarpa HOM05D000123 ORTHO05D000064 4.7e-06 54.7 29 82.8
Potri.014G027100 Populus trichocarpa HOM05D000123 ORTHO05D000064 4.7e-06 54.7 29 82.8
Nitab4.5_0011724g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 6.1e-06 54.3 142 35.2
Hund23929 Selenicereus undatus HOM05D000123 ORTHO05D000064 6.1e-06 54.3 104 41.3
THA.LOC104814679 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 6.1e-06 54.3 33 78.8
TAR381G1384 Trochodendron aralioides HOM05D000123 ORTHO05D000064 6.1e-06 54.3 33 75.8
CiPaw.16G042200 Carya illinoinensis HOM05D000123 ORTHO05D000064 8.0e-06 53.9 33 75.8
AUR62000210 Chenopodium quinoa HOM05D000123 ORTHO05D000064 8.0e-06 53.9 76 42.1
AUR62006556 Chenopodium quinoa HOM05D000123 ORTHO05D000064 8.0e-06 53.9 76 42.1
Gohir.A03G076400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 8.0e-06 53.9 140 33.6
Medtr3g101870 Medicago truncatula HOM05D000123 ORTHO05D000064 8.0e-06 53.9 68 50.0
Nitab4.5_0000287g0190 Nicotiana tabacum HOM05D000123 ORTHO05D000064 8.0e-06 53.9 143 35.0
SGA_v2.0_scaffold28G11785 Striga asiatica HOM05D000123 ORTHO05D000064 8.0e-06 53.9 137 35.8


User provided reference genes

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