Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 2.6e-234 815.1 424 100.0
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 3.2e-192 675.2 444 82.7
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 9.2e-192 673.7 441 82.1
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.0e-190 670.2 439 81.8
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.5e-189 666.4 440 81.1
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.9e-189 666.0 441 81.9
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.1e-188 662.5 419 82.3
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 6.2e-188 661.0 419 82.1
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 1.4e-187 659.8 420 83.6
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.7e-185 652.9 440 79.3
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 4.6e-183 644.8 420 82.4
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 4.6e-183 644.8 420 82.4
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-181 639.8 439 77.2
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 1.6e-180 636.3 418 80.4
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.1e-179 633.6 419 80.4
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 3.1e-179 632.1 417 80.6
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 2.2e-177 625.9 425 79.8
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 4.9e-177 624.8 418 79.9
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 8.1e-172 607.4 432 73.6
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 5.5e-152 541.6 367 79.3
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.5e-149 532.7 434 64.7
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.3e-148 530.4 456 60.7
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.4e-147 526.9 426 65.5
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 6.9e-147 524.6 450 61.1
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 3.4e-146 522.3 446 64.1
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 4.5e-146 521.9 451 64.1
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 1.7e-145 520.0 455 61.5
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 2.9e-145 519.2 450 62.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 3.8e-145 518.8 450 62.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 4.2e-144 515.4 451 62.3
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.2e-143 513.8 449 62.8
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.6e-143 513.5 468 61.5
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.6e-143 513.5 431 63.6
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.7e-143 512.7 431 62.4
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.6e-143 511.9 438 62.3
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.3e-142 509.6 435 61.1
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 3.0e-142 509.2 447 62.6
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 3.0e-142 509.2 428 62.9
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 8.8e-142 507.7 434 63.1
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 8.8e-142 507.7 434 61.8
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.1e-141 507.3 427 61.8
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.9e-141 506.5 427 62.1
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 2.5e-141 506.1 413 65.4
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 5.7e-141 505.0 458 60.3
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.3e-140 503.8 429 62.9
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 3.7e-140 502.3 445 60.7
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 8.2e-140 501.1 426 62.9
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 8.2e-140 501.1 444 59.9
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.4e-139 500.4 442 62.2
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 1.8e-139 500.0 425 62.1
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 5.3e-139 498.4 445 59.3
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 6.9e-139 498.0 473 59.0
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.2e-138 497.3 447 60.9
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.5e-138 496.9 447 60.2
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 4.5e-138 495.4 447 60.9
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 1.7e-137 493.4 429 60.8
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.2e-137 493.0 419 62.1
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.2e-137 493.0 455 59.6
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 2.9e-137 492.7 424 61.1
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 8.5e-137 491.1 435 59.3
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.4e-136 490.3 447 60.2
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.9e-136 490.0 459 59.7
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 2.5e-136 489.6 449 59.7
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.5e-136 489.6 500 54.4
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 4.2e-136 488.8 425 59.3
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.6e-135 486.9 448 59.8
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.6e-135 486.9 434 60.4
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 6.1e-135 485.0 489 56.4
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 7.9e-135 484.6 457 59.3
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.8e-134 483.4 448 59.6
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 3.0e-134 482.6 431 60.3
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 3.9e-134 482.3 439 60.1
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 5.1e-134 481.9 436 59.2
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 5.1e-134 481.9 439 61.3
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 8.8e-134 481.1 447 58.8
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 8.8e-134 481.1 453 59.2
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.5e-133 480.3 446 59.0
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 2.6e-133 479.6 478 55.2
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.3e-132 477.2 441 58.3
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.3e-132 477.2 434 58.8
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 6.3e-132 474.9 463 57.7
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 8.2e-132 474.6 434 60.1
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.1e-131 474.2 468 57.3
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 3.1e-131 472.6 407 61.2
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.2e-130 470.7 431 59.6
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 3.4e-130 469.2 427 58.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 7.7e-130 468.0 391 62.9
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.9e-129 466.1 457 58.0
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.4e-128 463.8 425 59.1
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 3.6e-127 459.1 443 58.0
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 6.1e-127 458.4 424 58.5
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.3e-124 450.7 497 51.3
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 3.1e-123 446.0 473 52.4
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.2e-122 444.1 420 60.0
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.6e-122 443.7 468 53.4
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 2.2e-121 439.9 433 54.0
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 5.0e-121 438.7 423 58.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.5e-120 437.2 481 52.6
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.9e-120 436.8 451 55.0
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 9.4e-120 434.5 464 53.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 2.7e-119 433.0 390 62.1
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.7e-119 433.0 476 52.5
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.7e-116 423.7 345 64.6
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 7.2e-112 408.3 426 55.2
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.3e-110 403.3 425 52.7
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.3e-110 403.3 424 52.4
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.1e-99 367.9 450 46.2
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.0e-97 361.3 289 66.1
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.4e-94 350.9 526 40.9
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.9e-92 343.2 413 48.2
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 2.7e-90 336.7 487 42.1
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 2.7e-90 336.7 475 41.9
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 6.6e-89 332.0 277 64.3
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 5.2e-86 322.4 354 51.1
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 3.7e-84 316.2 361 53.2
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 8.3e-84 315.1 270 64.1
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 9.2e-75 285.0 620 33.1
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 3.8e-68 263.1 242 62.8
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 2.4e-67 260.4 513 36.1
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 5.8e-53 212.6 450 33.6
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.4e-51 208.0 487 32.0
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.5e-48 198.0 453 31.3
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.4e-43 181.4 177 58.8
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 6.2e-39 166.0 221 48.4
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.6e-34 151.4 115 70.4
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 6.1e-34 149.4 176 54.0
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 3.0e-33 147.1 209 44.0
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 5.1e-33 146.4 189 54.0
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 6.7e-33 146.0 189 54.0
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.3e-23 115.2 109 60.6
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.8e-22 111.3 111 59.5
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 2.7e-18 97.4 151 42.4
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.1e-16 92.0 91 56.0
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.2e-15 87.8 65 64.6
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.8e-15 86.7 93 55.9
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.8e-14 84.7 65 70.8
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.8e-14 84.7 93 54.8
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 9.1e-14 82.4 62 61.3
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 5.9e-13 79.7 136 41.2
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.1e-11 75.5 233 28.3
BraA09t38023Z Brassica rapa HOM05D004999 ORTHO05D021597 1.8e-09 68.2 91 47.3
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 2.3e-09 67.8 53 60.4
C04p27960 Brassica napus HOM05D004999 ORTHO05D024529 6.7e-09 66.2 140 37.9
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 8.8e-09 65.9 36 75.0
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 1.1e-08 65.5 79 54.4
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 2.0e-08 64.7 59 61.0
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 4.4e-08 63.5 34 82.4
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 8.2e-07 59.3 112 34.8


User provided reference genes

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