Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 2.0e-261 905.2 444 100.0
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.9e-216 755.7 443 84.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.1e-215 752.3 444 82.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 6.2e-215 750.7 445 82.5
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 4.0e-214 748.0 445 83.6
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.3e-212 743.0 433 84.8
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 2.7e-210 735.3 436 83.7
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 4.6e-210 734.6 441 82.8
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 5.1e-209 731.1 436 83.5
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 5.1e-209 731.1 436 83.5
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 6.7e-209 730.7 445 82.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.1e-208 729.9 445 82.0
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.4e-190 669.8 441 74.4
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 5.7e-184 647.9 429 73.4
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 9.7e-184 647.1 443 72.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.3e-183 646.7 432 71.3
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 6.3e-183 644.4 435 71.3
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 4.1e-182 641.7 437 72.1
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 4.5e-181 638.3 433 71.6
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 4.5e-181 638.3 408 75.7
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.0e-180 637.1 434 72.8
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.0e-180 637.1 441 71.2
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.7e-180 636.3 429 71.8
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.0e-180 634.8 437 71.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.0e-180 634.8 429 71.3
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.0e-180 634.8 428 71.7
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-179 633.6 437 72.8
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.1e-179 633.6 437 72.8
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.4e-179 633.3 437 72.5
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 3.6e-178 628.6 422 72.0
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.0e-177 625.5 441 70.5
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 1.1e-176 623.6 420 73.3
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.0e-176 622.9 421 71.0
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 3.3e-176 622.1 421 70.8
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.3e-176 622.1 421 70.8
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.7e-175 619.8 421 70.5
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.2e-175 619.4 432 70.8
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.1e-174 617.1 439 70.8
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.8e-174 616.3 346 87.6
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 3.1e-174 615.5 435 68.7
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 4.1e-174 615.1 435 69.4
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 9.1e-174 614.0 395 74.2
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 7.7e-173 610.9 423 70.0
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.7e-172 609.8 439 68.3
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.2e-172 609.4 435 68.5
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 2.2e-172 609.4 444 68.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 6.5e-172 607.8 449 67.7
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.1e-171 607.1 414 71.5
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.4e-171 606.7 426 70.0
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.6e-170 603.2 428 70.1
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.7e-170 601.7 436 68.1
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 8.0e-170 600.9 413 71.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.3e-169 599.4 421 68.6
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 2.3e-169 599.4 435 67.8
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 3.0e-169 599.0 424 68.2
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 8.8e-169 597.4 427 68.1
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.6e-168 595.9 407 71.0
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 4.4e-168 595.1 432 66.0
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.3e-167 593.6 398 71.4
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 8.2e-167 590.9 438 68.3
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.1e-166 590.5 421 69.8
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.8e-166 589.7 436 66.3
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 2.4e-166 589.3 436 66.3
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 3.1e-166 589.0 430 66.0
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 3.1e-166 589.0 434 67.7
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.0e-165 586.3 409 69.9
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.5e-163 579.3 431 67.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 4.2e-163 578.6 421 68.9
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 7.2e-163 577.8 421 68.2
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 9.4e-163 577.4 422 65.2
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.6e-162 576.6 427 67.2
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.7e-162 575.9 418 66.7
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 3.6e-162 575.5 427 67.2
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 4.7e-162 575.1 421 68.6
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 8.0e-162 574.3 439 64.5
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 5.2e-161 571.6 402 69.9
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 6.7e-161 571.2 402 68.2
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 5.7e-160 568.2 437 64.8
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.7e-159 566.6 430 65.6
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.2e-159 566.2 417 66.2
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 3.7e-159 565.5 444 63.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 3.7e-159 565.5 437 63.6
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.1e-158 563.9 408 65.9
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-158 563.9 470 61.5
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 3.1e-158 562.4 439 63.6
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 5.3e-158 561.6 408 66.2
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 7.0e-158 561.2 420 66.2
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 9.1e-158 560.8 439 64.0
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.0e-156 557.4 389 68.9
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.7e-156 556.6 396 68.4
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 7.2e-155 551.2 433 62.4
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.0e-153 547.4 386 68.4
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.8e-150 536.6 348 74.4
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.5e-147 526.2 391 66.8
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 3.6e-146 522.3 384 66.1
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.0e-145 520.8 420 62.9
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 3.0e-145 519.2 387 65.4
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.2e-144 517.3 433 58.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 7.8e-141 504.6 401 61.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 2.9e-140 502.7 395 62.3
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 8.6e-140 501.1 430 60.0
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 3.9e-132 475.7 423 57.0
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 8.6e-132 474.6 357 66.1
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.6e-130 470.3 356 64.9
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.1e-129 467.6 406 57.9
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.4e-129 467.2 405 56.8
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 2.3e-129 466.5 450 54.0
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.0e-129 465.7 356 64.0
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 9.8e-128 461.1 295 72.9
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.9e-127 459.5 356 63.2
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.4e-126 456.4 410 56.3
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 4.1e-126 455.7 406 56.2
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.2e-122 444.1 306 69.0
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.1e-122 443.4 291 73.5
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 4.8e-106 389.0 297 68.0
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.1e-105 387.9 256 72.3
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 3.5e-101 372.9 318 55.3
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.0e-100 371.3 327 56.0
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.4e-94 350.9 417 45.1
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 3.7e-90 336.3 241 73.9
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.2e-87 327.0 179 86.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.9e-87 325.9 214 71.0
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 4.9e-87 325.9 287 56.1
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 6.9e-73 278.9 191 63.9
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 1.1e-70 271.6 348 40.2
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 7.9e-69 265.4 227 58.1
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.4e-65 254.6 245 50.6
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 4.5e-64 249.6 167 79.6
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 2.2e-63 247.3 243 52.3
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 8.5e-55 218.8 163 68.1
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.0e-44 183.3 123 65.9
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.1e-38 165.2 135 51.1
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 8.0e-37 159.1 134 50.7
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 3.0e-36 157.1 292 37.0
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 7.7e-32 142.5 180 42.8
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.0e-31 142.1 114 57.0
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 8.6e-31 139.0 166 50.0
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.0e-28 130.2 399 26.6
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 7.8e-24 115.9 80 67.5
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 3.1e-20 104.0 63 71.4
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.2e-19 102.1 339 27.4
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 2.5e-14 84.3 58 67.2
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 9.5e-14 82.4 51 70.6
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 1.7e-10 71.6 89 48.3
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 1.7e-10 71.6 89 48.3
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.2e-09 67.4 54 59.3


User provided reference genes

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