Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 6.1e-42 173.7 86 100.0
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 1.4e-35 152.5 88 88.6
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 5.5e-35 150.6 88 87.5
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 1.2e-34 149.4 88 86.4
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 1.2e-34 149.4 88 86.4
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 2.7e-34 148.3 88 86.4
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 6.1e-34 147.1 88 85.2
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 1.0e-33 146.4 88 85.2
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 1.4e-33 146.0 88 85.2
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 1.4e-25 119.4 85 72.9
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 1.4e-17 92.8 90 56.7
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 1.8e-17 92.4 91 54.9
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 4.0e-17 91.3 90 54.4
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 1.5e-16 89.4 92 53.3
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 3.4e-16 88.2 92 54.3
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 5.7e-16 87.4 81 59.3
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 9.8e-16 86.7 89 52.8
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.3e-15 86.3 83 54.2
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 2.8e-15 85.1 89 51.7
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 4.8e-15 84.3 92 51.1
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 4.8e-15 84.3 92 53.3
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.8e-15 84.3 92 53.3
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.8e-15 84.3 92 53.3
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.8e-15 84.3 92 53.3
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.8e-15 84.3 92 53.3
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 6.3e-15 84.0 89 52.8
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 6.3e-15 84.0 81 54.3
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 8.3e-15 83.6 94 51.1
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 8.3e-15 83.6 94 53.2
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 8.3e-15 83.6 92 53.3
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 1.1e-14 83.2 83 51.8
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 1.1e-14 83.2 83 51.8
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 1.1e-14 83.2 87 50.6
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 1.1e-14 83.2 89 51.7
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 1.4e-14 82.8 92 50.0
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 1.4e-14 82.8 83 56.6
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 1.4e-14 82.8 92 50.0
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 1.4e-14 82.8 91 50.5
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 1.8e-14 82.4 93 53.8
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 3.1e-14 81.6 93 53.8
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 5.4e-14 80.9 90 53.3
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 5.4e-14 80.9 82 53.7
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 7.0e-14 80.5 90 51.1
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 7.0e-14 80.5 93 51.6
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 9.1e-14 80.1 90 53.3
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 9.1e-14 80.1 90 53.3
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 9.1e-14 80.1 92 48.9
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 1.2e-13 79.7 89 50.6
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 1.2e-13 79.7 93 52.7
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 1.6e-13 79.3 91 50.5
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.6e-13 79.3 90 50.0
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 2.0e-13 79.0 95 50.5
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 2.0e-13 79.0 82 54.9
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 2.7e-13 78.6 78 56.4
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 2.7e-13 78.6 89 50.6
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 2.7e-13 78.6 87 51.7
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 2.7e-13 78.6 90 51.1
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 2.7e-13 78.6 93 49.5
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 3.5e-13 78.2 82 53.7
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 4.5e-13 77.8 93 51.6
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 7.7e-13 77.0 80 51.2
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 7.7e-13 77.0 92 45.7
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 7.7e-13 77.0 91 48.4
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 7.7e-13 77.0 88 50.0
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 1.0e-12 76.6 91 46.2
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 1.7e-12 75.9 80 51.2
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 2.3e-12 75.5 93 50.5
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 3.8e-12 74.7 83 49.4
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 3.8e-12 74.7 89 50.6
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 3.8e-12 74.7 86 48.8
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 3.8e-12 74.7 81 54.3
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 5.0e-12 74.3 83 51.8
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 5.0e-12 74.3 75 52.0
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 6.6e-12 73.9 87 51.7
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 1.1e-11 73.2 85 48.2
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.1e-11 73.2 87 44.8
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 1.9e-11 72.4 75 50.7
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 1.9e-11 72.4 82 50.0
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 1.9e-11 72.4 57 59.6
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 1.9e-11 72.4 90 50.0
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 2.5e-11 72.0 79 48.1
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 2.5e-11 72.0 69 55.1
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 4.2e-11 71.2 80 51.2
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 4.2e-11 71.2 80 51.2
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 5.5e-11 70.9 84 50.0
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 5.5e-11 70.9 76 55.3
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 5.5e-11 70.9 81 54.3
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 5.5e-11 70.9 88 47.7
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 9.5e-11 70.1 80 52.5
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 9.5e-11 70.1 75 48.0
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 1.2e-10 69.7 80 51.2
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 1.2e-10 69.7 80 51.2
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 1.6e-10 69.3 76 50.0
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 2.8e-10 68.6 75 49.3
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 2.8e-10 68.6 92 44.6
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 3.6e-10 68.2 78 47.4
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 3.6e-10 68.2 75 48.0
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 3.6e-10 68.2 57 54.4
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 4.7e-10 67.8 93 41.9
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 4.7e-10 67.8 93 41.9
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 4.7e-10 67.8 86 44.2
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 4.7e-10 67.8 78 47.4
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 8.0e-10 67.0 87 44.8
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 8.0e-10 67.0 81 46.9
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 8.0e-10 67.0 75 49.3
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 8.0e-10 67.0 75 49.3
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 8.0e-10 67.0 82 51.2
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 1.0e-09 66.6 84 45.2
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 1.0e-09 66.6 80 48.8
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 1.0e-09 66.6 87 44.8
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.0e-09 66.6 87 44.8
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 1.4e-09 66.2 86 46.5
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 1.4e-09 66.2 85 47.1
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 1.4e-09 66.2 82 51.2
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 1.8e-09 65.9 81 48.1
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.8e-09 65.9 75 48.0
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 2.3e-09 65.5 87 43.7
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 2.3e-09 65.5 87 43.7
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 4.0e-09 64.7 80 45.0
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 5.2e-09 64.3 80 47.5
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 5.2e-09 64.3 86 45.3
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 6.8e-09 63.9 83 48.2
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 6.8e-09 63.9 85 44.7
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 6.8e-09 63.9 77 46.8
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 1.2e-08 63.2 85 45.9
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 1.2e-08 63.2 80 48.8
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 1.5e-08 62.8 83 43.4
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 1.5e-08 62.8 73 50.7
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 2.0e-08 62.4 87 42.5
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 3.4e-08 61.6 85 44.7
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 3.4e-08 61.6 78 46.2
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 4.4e-08 61.2 83 43.4
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 7.5e-08 60.5 76 46.1
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 1.7e-07 59.3 84 41.7
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 2.2e-07 58.9 83 44.6
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 3.7e-07 58.2 99 40.4
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 3.7e-07 58.2 84 45.2
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 3.7e-07 58.2 84 42.9
Sc18g0002250 Simmondsia chinensis HOM05D000786 ORTHO05D000779 6.3e-07 57.4 59 47.5
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 1.4e-06 56.2 43 55.8
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 1.4e-06 56.2 38 63.2
Zm00001eb273520 Zea mays HOM05D000786 ORTHO05D006216 2.4e-06 55.5 49 51.0
CiPaw.16G009100 Carya illinoinensis HOM05D000786 ORTHO05D006216 3.1e-06 55.1 66 51.5
ECA234G0204 Erigeron canadensis HOM05D000786 ORTHO05D000779 3.1e-06 55.1 39 59.0
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 4.1e-06 54.7 39 59.0
Prupe.3G045700 Prunus persica HOM05D000786 ORTHO05D000779 4.1e-06 54.7 39 56.4
Hma1.2p1_0496F.1_g165960 Hydrangea macrophylla HOM05D000786 ORTHO05D000779 5.4e-06 54.3 53 49.1
MD09G1189600 Malus domestica HOM05D000786 ORTHO05D000779 5.4e-06 54.3 39 56.4
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 5.4e-06 54.3 75 46.7
BcaC05g29785 Brassica carinata HOM05D000786 ORTHO05D000779 7.0e-06 53.9 44 56.8
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 7.0e-06 53.9 58 46.6
Glyma.13G348000 Glycine max HOM05D000786 ORTHO05D000779 7.0e-06 53.9 39 56.4
Pp3c2_8840 Physcomitrium patens HOM05D000786 ORTHO05D000779 7.0e-06 53.9 43 53.5
Sp3g04610 Schrenkiella parvula HOM05D000786 ORTHO05D000779 7.0e-06 53.9 45 55.6
THA.LOC104818741 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 7.0e-06 53.9 44 54.5
AT2G47480 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 9.2e-06 53.5 37 62.2
A10p25790 Brassica napus HOM05D000786 ORTHO05D000779 9.2e-06 53.5 80 37.5
Lj1g0021494 Lotus japonicus HOM05D000786 ORTHO05D000779 9.2e-06 53.5 38 55.3
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 9.2e-06 53.5 38 60.5
PSO210G3202 Papaver somniferum HOM05D000786 ORTHO05D000779 9.2e-06 53.5 55 45.5
PSO210G5208 Papaver somniferum HOM05D000786 ORTHO05D000779 9.2e-06 53.5 55 45.5


User provided reference genes

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