Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 2.7e-31 138.3 82 100.0
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.4e-26 121.3 82 81.7
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.5e-26 120.9 82 86.6
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 5.8e-26 120.6 82 87.8
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 9.9e-26 119.8 82 80.5
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.9e-25 118.2 82 80.5
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 8.4e-25 116.7 82 78.0
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 7.1e-24 113.6 83 85.5
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.5e-21 105.9 83 77.1
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 1.9e-21 105.5 83 81.9
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 1.9e-21 105.5 83 81.9
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-20 101.3 85 77.6
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-20 101.3 85 77.6
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 3.7e-20 101.3 85 77.6
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 3.7e-20 101.3 85 77.6
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 4.8e-20 100.9 86 76.7
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 4.8e-20 100.9 86 76.7
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 4.0e-19 97.8 85 75.3
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 2.0e-18 95.5 83 77.1
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 2.0e-18 95.5 83 77.1
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 2.0e-18 95.5 83 77.1
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.7e-17 92.4 75 66.7
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 8.4e-17 90.1 83 75.9
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 8.4e-17 90.1 83 75.9
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 7.1e-16 87.0 79 60.8
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 1.6e-15 85.9 82 70.7
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.7e-15 85.1 69 62.3
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 1.0e-14 83.2 85 61.2
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 1.0e-14 83.2 85 61.2
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 1.0e-14 83.2 85 61.2
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-14 82.4 84 58.3
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-14 82.4 85 60.0
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.8e-14 82.4 84 58.3
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.8e-14 82.4 84 58.3
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.8e-14 82.4 84 58.3
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.8e-14 82.4 84 58.3
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.3e-14 82.0 84 66.7
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 3.0e-14 81.6 85 65.9
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 3.9e-14 81.3 85 64.7
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 5.1e-14 80.9 83 69.9
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 1.9e-13 79.0 86 65.1
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 1.9e-13 79.0 86 65.1
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.2e-10 69.7 62 59.7
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 1.5e-10 69.3 61 60.7
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.3e-09 66.2 62 58.1
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.9e-09 65.1 49 65.3
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.9e-09 65.1 49 65.3
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.9e-09 65.1 49 65.3
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.8e-09 64.7 61 60.7
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.8e-09 64.7 73 52.1
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 3.8e-09 64.7 55 61.8
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 6.5e-09 63.9 67 50.7
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 8.4e-09 63.5 77 58.4
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.1e-08 63.2 67 50.7
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.4e-08 62.8 57 56.1
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.9e-08 62.4 60 56.7
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.9e-08 62.4 68 51.5
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.9e-08 62.4 64 56.2
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 2.5e-08 62.0 60 61.7
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.5e-08 62.0 67 56.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.5e-08 62.0 64 51.6
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 4.2e-08 61.2 63 49.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 5.5e-08 60.8 64 53.1
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 5.5e-08 60.8 61 55.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.5e-08 60.8 57 56.1
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.1e-08 60.5 64 50.0
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.1e-08 60.5 67 47.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 9.3e-08 60.1 67 50.7
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 9.3e-08 60.1 61 54.1
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 9.3e-08 60.1 59 54.2
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 9.3e-08 60.1 79 48.1
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.2e-07 59.7 71 59.2
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.2e-07 59.7 67 61.2
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.2e-07 59.7 62 54.8
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.6e-07 59.3 63 54.0
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.6e-07 59.3 62 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.6e-07 59.3 53 54.7
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.6e-07 59.3 60 51.7
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.6e-07 59.3 73 49.3
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 2.1e-07 58.9 56 53.6
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.1e-07 58.9 58 53.4
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.1e-07 58.9 58 53.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.1e-07 58.9 60 51.7
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 2.1e-07 58.9 49 69.4
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 2.7e-07 58.5 67 56.7
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.7e-07 58.5 62 51.6
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.5e-07 58.2 75 42.7
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 3.5e-07 58.2 62 54.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.5e-07 58.2 57 56.1
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 3.5e-07 58.2 48 58.3
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.6e-07 57.8 74 52.7
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.6e-07 57.8 61 52.5
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 4.6e-07 57.8 57 54.4
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 6.1e-07 57.4 67 47.8
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.1e-07 57.4 54 63.0
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.1e-07 57.4 67 49.3
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.1e-07 57.4 67 49.3
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.1e-07 57.4 74 52.7
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 6.1e-07 57.4 67 52.2
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.1e-07 57.4 52 57.7
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 7.9e-07 57.0 56 64.3
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 7.9e-07 57.0 69 46.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.9e-07 57.0 49 59.2
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 7.9e-07 57.0 60 53.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 7.9e-07 57.0 52 57.7
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.0e-06 56.6 74 52.7
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.0e-06 56.6 63 49.2
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 55.8
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.3e-06 56.2 61 50.8
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.3e-06 56.2 64 46.9
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.8e-06 55.8 68 50.0
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 1.8e-06 55.8 56 64.3
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.8e-06 55.8 56 64.3
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.3e-06 55.5 72 43.1
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.3e-06 55.5 68 48.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 59 50.8
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.0e-06 55.1 69 46.4
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.0e-06 55.1 44 59.1
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 3.0e-06 55.1 66 60.6
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 3.0e-06 55.1 56 51.8
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.9e-06 54.7 73 45.2
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 3.9e-06 54.7 36 72.2
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 3.9e-06 54.7 44 65.9
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.1e-06 54.3 59 55.9
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.1e-06 54.3 74 41.9
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 5.1e-06 54.3 62 48.4
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 6.7e-06 53.9 58 55.2
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 6.7e-06 53.9 55 56.4
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 6.7e-06 53.9 74 44.6
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 6.7e-06 53.9 60 48.3
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.7e-06 53.9 54 51.9
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 8.7e-06 53.5 60 51.7
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 8.7e-06 53.5 58 46.6
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 8.7e-06 53.5 44 63.6
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 8.7e-06 53.5 39 69.2
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 8.7e-06 53.5 79 46.8
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 8.7e-06 53.5 67 56.7
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 8.7e-06 53.5 50 54.0
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 8.7e-06 53.5 56 62.5


User provided reference genes

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