Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 3027.7 1522 100.0
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 2408.3 1529 80.5
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2404.8 1539 80.1
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 2385.9 1530 80.3
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 2345.1 1561 77.8
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2305.8 1524 78.7
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2301.9 1525 78.6
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2301.9 1525 78.6
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 2298.9 1539 78.0
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 2294.2 1543 77.7
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2291.5 1523 78.5
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 2290.4 1544 77.7
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2092.8 1464 74.3
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 2016.5 1531 68.8
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1579.7 1578 54.9
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1574.7 1581 54.6
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1567.0 1580 54.8
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1558.1 1568 55.2
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1557.0 1567 55.4
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1554.3 1581 54.3
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1550.8 1569 54.9
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1549.6 1568 55.1
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1533.5 1592 53.8
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1528.1 1575 53.5
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1523.8 1596 54.3
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1523.5 1620 52.9
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1516.9 1580 53.4
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1516.1 1571 53.9
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1513.4 1568 53.8
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1507.7 1543 54.4
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1489.9 1523 54.2
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1489.6 1570 53.1
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1489.2 1572 53.0
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1482.2 1588 52.8
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1481.5 1606 52.1
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1480.3 1581 53.2
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1451.8 1545 53.1
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1446.8 1669 49.7
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1442.6 1574 52.0
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1428.3 1569 51.3
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1415.6 1570 50.9
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1414.8 1661 49.5
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1411.4 1576 50.2
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1409.0 1560 50.8
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1404.0 1576 50.9
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1401.7 1564 50.6
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1401.3 1565 50.5
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1398.6 1583 50.5
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 0.0e+00 1396.3 867 80.6
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1395.6 1564 50.2
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1393.3 1577 50.0
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1390.9 1564 50.1
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1390.2 1584 50.0
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1388.2 1576 49.6
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1388.2 1564 50.3
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1378.6 1449 52.8
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1377.8 1579 50.5
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1376.3 1567 49.6
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1375.9 1569 49.6
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1364.4 1558 49.9
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1363.6 1574 49.2
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1362.8 1577 49.3
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1352.4 1561 49.7
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1352.4 1594 48.9
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1347.0 1599 47.7
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1345.5 1573 48.3
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1345.1 1596 49.4
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1340.9 1554 48.9
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1339.3 1403 53.8
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1339.3 1558 48.7
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1337.0 1632 48.5
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1325.8 1596 48.4
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1322.0 1552 48.5
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1317.4 1550 49.1
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1310.8 1577 48.1
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1301.2 1570 48.0
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1295.4 1555 47.3
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1295.4 1573 47.4
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1294.6 1638 46.3
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1290.4 1594 47.6
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1271.5 1548 47.8
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1256.1 1594 47.9
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1254.6 1576 46.5
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1250.3 1444 49.7
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1250.0 1575 47.3
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1245.3 1554 45.5
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1231.5 1553 46.3
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1183.7 1380 49.3
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1177.9 1643 44.6
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1146.3 1592 43.0
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1121.7 1417 47.5
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1115.1 1347 47.9
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1106.7 1595 43.4
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 3.4e-305 1052.4 1584 40.5
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.2e-302 1043.9 1218 49.9
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.4e-282 977.2 1155 48.9
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 4.8e-267 925.6 981 52.0
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 3.7e-235 819.7 1695 34.6
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 6.3e-166 589.7 1535 30.0
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.2e-164 585.5 544 59.0
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.5e-156 557.0 549 58.1
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.3e-150 536.6 1029 35.0
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 4.2e-138 497.3 685 42.0
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 2.0e-111 408.7 399 54.9
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.8e-65 254.6 593 30.0
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 3.1e-56 225.3 184 59.2
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 1.0e-46 193.7 164 63.4
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 1.1e-29 137.1 107 63.6
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 1.7e-25 123.2 95 63.2
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.0e-23 116.3 84 65.5
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.7e-23 115.9 76 71.1
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 4.5e-23 115.2 90 58.9
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 3.3e-21 109.0 76 72.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.2e-17 96.3 67 77.6
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.8e-16 93.2 125 45.6
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.8e-16 93.2 125 45.6
AL6G45530 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 1.5e-13 83.6 52 75.0
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 5.4e-08 65.1 68 54.4


User provided reference genes

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