Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 6.6e-244 847.0 460 100.0
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 2.8e-141 506.1 484 65.1
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 9.8e-139 497.7 501 64.1
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 3.6e-125 452.6 489 60.7
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 2.6e-123 446.4 486 59.9
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.7e-120 436.4 499 57.9
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 6.0e-120 435.3 502 58.0
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 5.1e-119 432.2 491 57.8
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 5.6e-118 428.7 485 58.6
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 3.6e-117 426.0 486 57.8
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.4e-116 423.3 491 57.2
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 2.9e-114 416.4 499 55.9
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 3.8e-114 416.0 513 56.7
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 4.9e-114 415.6 498 56.2
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 1.5e-110 404.1 506 54.9
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 4.8e-109 399.1 497 55.1
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 4.8e-109 399.1 497 55.1
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 3.3e-102 376.3 485 53.8
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 4.2e-97 359.4 479 52.0
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 7.4e-94 348.6 521 49.9
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 8.2e-93 345.1 494 49.0
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.6e-88 330.9 474 50.2
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 5.1e-87 325.9 477 49.1
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 8.7e-87 325.1 477 50.3
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 9.7e-86 321.6 482 50.8
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 5.3e-84 315.8 474 51.3
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 2.3e-79 300.4 495 46.5
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 3.0e-79 300.1 490 46.7
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 7.7e-75 285.4 506 45.7
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 2.2e-53 214.2 339 47.8
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.1e-44 185.3 498 35.3
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 3.1e-44 183.7 509 34.6
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 4.5e-43 179.9 481 36.0
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 7.7e-43 179.1 495 36.0
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.0e-42 178.7 471 34.6
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 3.8e-42 176.8 507 33.7
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.0e-42 176.4 480 35.2
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.1e-41 175.3 514 34.2
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 2.5e-41 174.1 503 32.4
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 5.5e-41 172.9 521 34.7
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.5e-41 172.9 483 35.4
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 8.0e-40 169.1 484 33.5
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 4.0e-39 166.8 469 34.8
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 5.7e-38 162.9 502 33.7
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 7.5e-38 162.5 476 32.8
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 1.7e-37 161.4 474 33.3
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 3.7e-37 160.2 505 34.5
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 4.9e-37 159.8 537 32.8
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 1.4e-36 158.3 501 34.5
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.8e-36 157.9 500 33.6
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.1e-36 156.8 515 32.4
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 1.6e-35 154.8 482 31.7
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.5e-35 153.7 470 31.9
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.5e-35 153.7 470 31.9
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 5.9e-35 152.9 498 30.9
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.8e-34 150.2 507 32.0
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 6.6e-34 149.4 506 30.0
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 8.6e-34 149.1 464 33.2
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 1.5e-33 148.3 513 31.6
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.9e-33 147.9 479 30.9
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 2.5e-33 147.5 475 30.9
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 9.5e-33 145.6 476 33.2
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.2e-32 145.2 496 30.4
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 2.1e-32 144.4 489 31.5
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 2.8e-32 144.1 480 31.7
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 3.6e-32 143.7 479 30.7
C03p84550 Brassica napus HOM05D002977 ORTHO05D003225 4.7e-32 143.3 167 50.3
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 4.7e-32 143.3 489 30.1
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 4.7e-32 143.3 503 31.4
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 6.1e-32 142.9 495 30.9
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 1.8e-31 141.4 509 30.5
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.3e-31 141.0 511 34.6
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 5.2e-31 139.8 508 30.3
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.5e-30 138.3 503 31.2
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 3.4e-30 137.1 517 32.5
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 3.4e-30 137.1 501 31.5
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 5.8e-30 136.3 480 29.2
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 8.3e-29 132.5 498 31.7
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 1.4e-28 131.7 483 30.2
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.8e-28 131.3 457 30.9
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.8e-28 131.3 498 29.1
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 2.7e-27 127.5 497 32.2
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 3.5e-27 127.1 512 30.1
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 3.5e-27 127.1 469 31.6
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 3.5e-27 127.1 496 31.0
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 4.6e-27 126.7 514 31.7
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 4.6e-27 126.7 500 30.0
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.7e-26 124.8 499 29.3
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 3.0e-26 124.0 482 30.1
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 1.1e-25 122.1 499 28.9
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.5e-25 120.9 487 27.5
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 2.5e-25 120.9 488 28.1
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 4.3e-25 120.2 504 28.2
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.3e-25 120.2 395 31.4
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 5.6e-25 119.8 468 28.2
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 5.6e-25 119.8 468 28.2
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 7.3e-25 119.4 472 29.7
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 9.5e-25 119.0 349 35.5
BolC3t20745H Brassica oleracea HOM05D002977 ORTHO05D003225 4.7e-24 116.7 121 54.5
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 1.8e-23 114.8 492 28.3
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 3.1e-23 114.0 521 32.6
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 8.9e-23 112.5 418 31.1
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.6e-22 110.9 415 30.1
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 3.4e-22 110.5 464 26.3
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 1.3e-21 108.6 489 28.4
BcaNung01001 Brassica carinata HOM05D002977 ORTHO05D003225 1.3e-21 108.6 100 66.0
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.3e-21 108.6 208 34.1
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 4.9e-21 106.7 444 29.3
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 8.3e-21 105.9 410 30.7
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 8.3e-21 105.9 467 31.3
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 8.3e-21 105.9 477 30.0
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.6e-19 101.7 435 31.3
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 7.8e-19 99.4 515 29.3
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.3e-18 98.6 243 39.9
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.6e-16 91.7 230 37.8
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 3.6e-16 90.5 386 27.7
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 6.2e-16 89.7 478 26.6
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 1.8e-15 88.2 478 27.8
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 2.3e-15 87.8 497 24.7
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 6.8e-15 86.3 462 28.1
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 2.9e-13 80.9 490 26.5
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 4.9e-13 80.1 243 34.2
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 8.3e-13 79.3 486 25.7
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 3.5e-11 73.9 456 26.3
Oeu062354.1 Olea europaea HOM05D002977 ORTHO05D003225 1.0e-10 72.4 89 47.2
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 2.3e-10 71.2 460 26.3
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 1.1e-09 68.9 508 27.0
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.1e-09 68.9 481 24.5
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.9e-09 68.2 484 25.6
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 2.5e-09 67.8 440 27.7
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 2.5e-09 67.8 490 25.3
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 2.5e-09 67.8 501 25.7
Lalb_Chr16g0379981 Lupinus albus HOM05D002977 ORTHO05D003225 4.3e-09 67.0 481 23.7
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.3e-09 67.0 488 24.2
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 7.3e-09 66.2 468 25.2
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.2e-08 65.5 458 24.9
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 1.6e-08 65.1 458 24.7
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 3.6e-08 63.9 563 26.5
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 1.1e-07 62.4 351 26.5
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.1e-07 62.4 468 24.6
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 1.8e-07 61.6 470 24.9
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 2.4e-07 61.2 301 30.2
PSO782G0819 Papaver somniferum HOM05D002977 ORTHO05D003225 2.4e-07 61.2 559 26.7
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 3.1e-07 60.8 457 25.6
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 3.1e-07 60.8 222 27.0
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 5.2e-07 60.1 467 25.3
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 8.9e-07 59.3 450 26.0
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 1.2e-06 58.9 460 25.2
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 1.2e-06 58.9 463 25.1
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 2.0e-06 58.2 460 25.2
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 3.4e-06 57.4 459 24.4
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 4.4e-06 57.0 479 26.3
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 5.8e-06 56.6 493 24.5
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 5.8e-06 56.6 470 25.1
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 7.6e-06 56.2 346 28.9


User provided reference genes

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