Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.3e-84 315.1 167 100.0
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.3e-53 213.4 169 75.7
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 1.3e-43 180.3 162 66.0
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 4.8e-43 178.3 185 59.5
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.4e-41 172.2 154 64.9
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 2.1e-38 162.9 169 59.8
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.7e-38 162.5 161 60.9
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 4.6e-38 161.8 169 56.8
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 4.3e-36 155.2 167 58.1
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.3e-35 153.7 175 57.7
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.3e-35 153.7 165 57.0
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 1.4e-34 150.2 168 54.8
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 4.1e-34 148.7 163 54.6
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 9.1e-34 147.5 152 56.6
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.5e-33 146.7 153 55.6
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 7.7e-33 144.4 152 55.3
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 7.7e-33 144.4 152 55.3
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.3e-32 143.7 147 60.5
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 1.7e-32 143.3 168 55.4
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 2.2e-32 142.9 169 56.2
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 3.8e-32 142.1 155 52.9
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 3.8e-32 142.1 161 50.9
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.2e-30 137.1 161 50.3
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.6e-30 136.7 167 52.7
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 2.7e-30 136.0 163 50.9
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 6.1e-30 134.8 163 48.5
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 3.0e-29 132.5 154 51.9
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.6e-28 129.4 156 51.3
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 5.7e-28 128.3 176 44.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 7.4e-28 127.9 149 49.7
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 9.7e-28 127.5 151 53.6
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.3e-27 127.1 153 47.7
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.3e-27 127.1 167 47.9
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 2.2e-27 126.3 125 54.4
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 2.2e-27 126.3 128 53.1
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 2.2e-27 126.3 128 53.1
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 2.8e-27 125.9 160 48.1
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 3.7e-27 125.6 157 49.0
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 3.7e-27 125.6 166 48.8
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 4.8e-27 125.2 161 46.0
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 4.8e-27 125.2 169 43.8
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 6.3e-27 124.8 138 52.2
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 8.2e-27 124.4 158 50.0
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 8.2e-27 124.4 157 47.8
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 8.2e-27 124.4 164 47.6
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 8.2e-27 124.4 164 47.6
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 8.2e-27 124.4 153 47.1
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.1e-26 124.0 157 47.8
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.4e-26 123.6 146 47.3
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 1.8e-26 123.2 165 46.1
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.8e-26 123.2 141 50.4
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 2.4e-26 122.9 179 50.8
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 2.4e-26 122.9 161 46.6
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.4e-26 122.9 148 51.4
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 3.1e-26 122.5 159 48.4
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 3.1e-26 122.5 162 49.4
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 6.9e-26 121.3 164 48.2
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 9.1e-26 120.9 151 49.0
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 9.1e-26 120.9 154 47.4
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 9.1e-26 120.9 161 46.0
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.5e-25 120.2 178 46.1
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.5e-25 120.2 163 47.9
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 1.5e-25 120.2 160 44.4
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.5e-25 120.2 169 46.7
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 2.0e-25 119.8 179 44.1
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 3.4e-25 119.0 147 51.0
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 3.4e-25 119.0 127 51.2
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 7.7e-25 117.9 171 43.9
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.0e-24 117.5 153 47.7
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.3e-24 117.1 179 43.6
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 1.7e-24 116.7 157 46.5
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 2.2e-24 116.3 179 42.5
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.9e-24 115.9 153 45.8
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.8e-24 115.5 143 49.7
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 6.5e-24 114.8 168 44.6
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 6.5e-24 114.8 161 46.0
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.1e-23 114.0 124 50.8
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.1e-23 114.0 135 50.4
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.4e-23 113.6 149 49.0
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.9e-23 113.2 156 44.9
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.5e-23 112.8 135 50.4
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 2.5e-23 112.8 159 43.4
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.2e-23 112.5 124 53.2
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 3.2e-23 112.5 140 47.1
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 4.2e-23 112.1 175 44.0
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 5.5e-23 111.7 163 45.4
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 5.5e-23 111.7 146 49.3
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 5.5e-23 111.7 146 49.3
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 5.5e-23 111.7 146 49.3
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 5.5e-23 111.7 146 49.3
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 5.5e-23 111.7 146 49.3
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 9.4e-23 110.9 171 42.7
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 9.4e-23 110.9 146 49.3
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 3.6e-22 109.0 167 46.7
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 6.1e-22 108.2 150 44.7
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 6.1e-22 108.2 158 43.0
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 8.0e-22 107.8 155 47.1
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 8.0e-22 107.8 148 48.0
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 8.0e-22 107.8 148 48.0
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 1.4e-21 107.1 167 41.9
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.4e-21 107.1 129 49.6
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.4e-21 107.1 171 42.7
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 3.9e-21 105.5 125 48.8
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.2e-21 105.1 155 46.5
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 5.2e-21 105.1 154 41.6
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 5.2e-21 105.1 153 46.4
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 6.7e-21 104.8 142 43.0
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 8.8e-21 104.4 112 54.5
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 1.1e-20 104.0 172 40.1
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 1.5e-20 103.6 155 41.9
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.6e-20 102.8 177 40.1
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 3.3e-20 102.4 180 41.7
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 5.7e-20 101.7 121 50.4
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 7.4e-20 101.3 182 41.8
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.7e-19 100.1 173 38.2
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 2.2e-19 99.8 174 39.1
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 2.2e-19 99.8 132 47.7
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 2.8e-19 99.4 135 45.2
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 8.2e-19 97.8 188 41.5
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.8e-18 96.7 132 48.5
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 9.1e-18 94.4 136 46.3
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 5.9e-17 91.7 142 42.3
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 7.7e-17 91.3 156 40.4
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 3.2e-15 85.9 199 39.2
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 9.4e-15 84.3 79 63.3
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 2.1e-14 83.2 105 45.7
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 2.7e-14 82.8 118 45.8
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.3e-13 79.7 161 36.0
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 5.2e-13 78.6 125 41.6
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 3.7e-11 72.4 164 36.0
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 4.5e-09 65.5 144 37.5
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.9e-07 60.1 164 31.1
AL6G40510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.5e-07 59.7 51 58.8
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 2.5e-07 59.7 68 48.5
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 3.2e-07 59.3 73 45.2
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 7.2e-07 58.2 110 39.1


User provided reference genes

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