Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 9.0e-52 206.8 119 100.0
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 6.7e-23 110.9 125 55.2
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.3e-21 104.4 142 50.7
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.4e-20 103.2 138 52.9
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.4e-20 103.2 138 57.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.8e-20 102.8 140 52.9
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 3.1e-20 102.1 138 52.2
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 9.0e-20 100.5 138 52.2
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 3.4e-19 98.6 142 48.6
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 3.4e-19 98.6 142 48.6
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 3.4e-19 98.6 142 48.6
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 3.4e-19 98.6 138 51.4
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 3.4e-19 98.6 142 48.6
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 4.5e-19 98.2 142 48.6
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 5.9e-19 97.8 142 47.9
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 5.9e-19 97.8 141 56.7
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 5.9e-19 97.8 141 48.9
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 2.2e-18 95.9 138 50.7
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 6.5e-18 94.4 144 47.2
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.4e-17 93.2 142 46.5
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.9e-17 92.8 142 46.5
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.5e-17 92.4 121 48.8
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 7.2e-17 90.9 142 45.8
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 9.4e-17 90.5 142 45.8
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 1.2e-16 90.1 133 54.1
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.3e-14 82.0 114 47.4
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 5.7e-14 81.3 75 54.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 5.7e-14 81.3 75 54.7
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 2.2e-13 79.3 82 51.2
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 4.8e-13 78.2 82 48.8
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 1.1e-12 77.0 82 50.0
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-12 77.0 82 50.0
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 1.1e-12 77.0 82 50.0
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.1e-12 77.0 56 62.5
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.4e-12 76.6 107 41.1
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.4e-12 76.6 115 43.5
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.4e-12 76.6 53 64.2
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.8e-12 76.3 54 66.7
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.4e-12 75.9 80 50.0
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 3.1e-12 75.5 69 53.6
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 3.1e-12 75.5 121 41.3
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 3.1e-12 75.5 121 41.3
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 3.1e-12 75.5 121 41.3
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 3.1e-12 75.5 64 57.8
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.1e-12 75.1 45 71.1
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 4.1e-12 75.1 52 61.5
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.1e-12 75.1 52 61.5
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.1e-12 75.1 52 61.5
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.1e-12 75.1 52 61.5
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.1e-12 75.1 54 64.8
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 5.3e-12 74.7 48 68.8
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.3e-12 74.7 74 56.8
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 6.9e-12 74.3 51 64.7
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.2e-11 73.6 50 64.0
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-11 72.8 119 43.7
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.0e-11 72.8 110 40.0
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.0e-11 72.8 52 59.6
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.6e-11 72.4 57 61.4
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.6e-11 72.4 51 60.8
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.6e-11 72.4 58 62.1
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.6e-11 72.4 52 59.6
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 2.6e-11 72.4 58 62.1
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 3.4e-11 72.0 103 44.7
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.5e-11 71.6 48 64.6
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 4.5e-11 71.6 76 55.3
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 4.5e-11 71.6 107 41.1
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.5e-11 71.6 51 58.8
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.5e-11 71.6 51 58.8
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 5.9e-11 71.2 106 38.7
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 7.7e-11 70.9 118 41.5
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.7e-11 70.9 51 62.7
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.0e-10 70.5 49 65.3
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.3e-10 70.1 42 71.4
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 1.3e-10 70.1 48 66.7
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.3e-10 70.1 112 41.1
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.3e-10 70.1 70 52.9
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.3e-10 70.1 48 68.8
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.7e-10 69.7 48 64.6
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.7e-10 69.7 49 67.3
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.2e-10 69.3 49 63.3
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 2.2e-10 69.3 56 62.5
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.2e-10 69.3 48 60.4
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 2.2e-10 69.3 48 68.8
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 2.9e-10 68.9 49 65.3
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 2.9e-10 68.9 122 36.1
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.9e-10 68.9 79 48.1
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.8e-10 68.6 113 42.5
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.8e-10 68.6 113 42.5
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 3.8e-10 68.6 128 41.4
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 3.8e-10 68.6 80 50.0
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.0e-10 68.2 113 42.5
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 5.0e-10 68.2 74 50.0
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 6.5e-10 67.8 49 63.3
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 6.5e-10 67.8 48 62.5
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 8.5e-10 67.4 48 64.6
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 8.5e-10 67.4 48 58.3
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.1e-09 67.0 111 40.5
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.1e-09 67.0 72 51.4
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.1e-09 67.0 78 51.3
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.1e-09 67.0 51 58.8
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.4e-09 66.6 131 34.4
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.9e-09 66.2 122 39.3
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.9e-09 66.2 51 54.9
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.9e-09 66.2 51 62.7
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 2.5e-09 65.9 50 62.0
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.2e-09 65.5 99 43.4
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 3.2e-09 65.5 48 56.2
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 4.2e-09 65.1 112 36.6
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 4.2e-09 65.1 48 58.3
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 4.2e-09 65.1 128 37.5
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 5.5e-09 64.7 53 56.6
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 7.2e-09 64.3 107 39.3
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 7.2e-09 64.3 112 39.3
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 9.4e-09 63.9 115 42.6
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 9.4e-09 63.9 54 57.4
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 9.4e-09 63.9 115 39.1
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.2e-08 63.5 56 55.4
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.6e-08 63.2 123 37.4
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 1.6e-08 63.2 56 55.4
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.6e-08 63.2 114 43.0
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.6e-08 63.2 55 50.9
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 2.1e-08 62.8 51 51.0
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.1e-08 62.8 51 56.9
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-08 62.8 50 58.0
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 2.1e-08 62.8 54 51.9
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 2.7e-08 62.4 51 58.8
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.7e-08 62.4 76 46.1
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.7e-08 62.4 58 51.7
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.7e-08 62.4 49 59.2
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.7e-08 62.4 48 56.2
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.6e-08 62.0 112 39.3
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.6e-08 62.0 50 56.0
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 3.6e-08 62.0 48 54.2
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.7e-08 61.6 68 50.0
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 4.7e-08 61.6 80 45.0
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 4.7e-08 61.6 47 63.8
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 4.7e-08 61.6 49 57.1
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.1e-08 61.2 107 36.4
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 6.1e-08 61.2 48 60.4
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 6.1e-08 61.2 48 54.2
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 6.1e-08 61.2 85 41.2
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.9e-08 60.8 51 52.9
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.9e-08 60.8 113 36.3
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 7.9e-08 60.8 53 49.1
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 7.9e-08 60.8 124 43.5
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.0e-07 60.5 112 37.5
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.0e-07 60.5 47 53.2
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.4e-07 60.1 117 33.3
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 1.4e-07 60.1 86 41.9
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.8e-07 59.7 116 37.9
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.8e-07 59.7 47 61.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-07 59.3 115 37.4
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.0e-07 58.9 51 51.0
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.0e-07 58.9 51 51.0
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.0e-07 58.9 68 42.6
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 3.9e-07 58.5 50 52.0
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.9e-07 58.5 54 53.7
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.1e-07 58.2 50 58.0
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.1e-07 58.2 50 58.0
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.1e-07 58.2 111 39.6
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.1e-07 58.2 50 58.0
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.7e-07 57.8 53 52.8
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.7e-07 57.8 53 52.8
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.7e-07 57.8 53 52.8
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.1e-06 57.0 50 52.0
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.1e-06 57.0 50 52.0
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.0e-06 56.2 43 58.1
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.6e-06 55.8 59 49.2
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 2.6e-06 55.8 52 50.0
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 2.6e-06 55.8 51 52.9
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 3.3e-06 55.5 59 47.5
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 4.4e-06 55.1 63 47.6
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 4.4e-06 55.1 54 48.1
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 9.7e-06 53.9 73 41.1


User provided reference genes

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