Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 0.0e+00 2047.7 1069 100.0
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 0.0e+00 1488.4 1087 71.8
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 0.0e+00 1452.2 1088 70.7
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 0.0e+00 1421.4 1085 69.7
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 0.0e+00 1372.1 1089 67.6
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 0.0e+00 1360.9 1089 67.5
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 0.0e+00 1356.3 1086 66.5
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 0.0e+00 1346.3 1086 66.6
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 0.0e+00 1336.2 1097 65.6
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 0.0e+00 1291.6 1085 64.4
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 0.0e+00 1119.0 1089 56.2
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 7.5e-307 1057.4 885 64.9
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 5.4e-305 1051.2 885 64.6
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 4.6e-264 915.2 742 66.8
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 1.4e-236 823.9 1106 44.6
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 2.1e-232 810.1 1098 42.9
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 1.8e-231 807.0 1089 44.3
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 8.7e-231 804.7 1114 43.3
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 4.8e-229 798.9 1100 42.3
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 7.7e-227 791.6 1102 42.6
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 8.5e-226 788.1 1082 43.0
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 7.2e-225 785.0 1095 42.1
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 4.6e-224 782.3 1081 43.1
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 6.1e-224 781.9 1083 43.4
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 3.0e-223 779.6 1093 42.6
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 2.8e-221 773.1 1099 42.1
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 1.4e-220 770.8 1077 42.2
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 3.1e-220 769.6 1102 42.1
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.2e-219 767.7 1105 41.4
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 2.6e-219 766.5 1076 41.1
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 5.5e-217 758.8 1107 41.2
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 7.4e-214 748.4 1063 40.7
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 1.3e-213 747.7 1094 41.7
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 1.1e-212 744.6 1082 40.9
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 1.3e-210 737.6 1092 40.6
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 1.7e-210 737.3 1066 41.5
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.6e-208 730.7 1084 39.9
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.6e-208 730.7 1047 42.7
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 1.8e-207 727.2 1097 40.8
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 3.3e-206 723.0 1112 39.8
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 8.2e-205 718.4 1097 40.4
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 7.7e-203 711.8 612 64.4
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 3.2e-201 706.4 1101 40.0
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 1.2e-198 698.0 1098 39.4
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 2.6e-198 696.8 1100 38.8
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 5.7e-198 695.7 1108 39.1
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 3.7e-197 693.0 1072 39.6
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 6.3e-197 692.2 1108 39.6
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 8.3e-197 691.8 1086 39.5
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 1.1e-196 691.4 1121 38.6
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 3.1e-196 689.9 1064 39.9
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 2.1e-192 677.2 1083 38.7
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 2.3e-191 673.7 1111 38.3
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 6.8e-191 672.2 1071 39.1
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 5.7e-190 669.1 1097 39.0
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 1.7e-189 667.5 1016 40.3
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 7.0e-188 662.1 1076 36.8
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 1.0e-186 658.3 1100 37.6
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 3.8e-186 656.4 1058 39.0
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 8.0e-184 648.7 1425 33.8
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 3.7e-181 639.8 1072 37.3
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 8.3e-181 638.6 1156 36.0
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 1.4e-180 637.9 893 42.3
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 9.2e-180 635.2 1057 38.3
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 7.8e-179 632.1 897 42.0
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 3.9e-178 629.8 1101 38.1
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 7.3e-177 625.5 1079 36.5
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 4.4e-174 616.3 1079 36.1
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 2.2e-173 614.0 887 43.1
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 5.4e-172 609.4 852 43.9
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 5.4e-172 609.4 1060 36.7
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 1.5e-169 601.3 1040 37.8
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 3.3e-169 600.1 1170 34.8
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 1.3e-165 588.2 1042 36.0
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 5.4e-164 582.8 1159 34.5
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 6.6e-162 575.9 1185 33.3
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 1.8e-151 541.2 921 38.1
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 4.0e-151 540.0 1064 34.8
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 1.1e-148 531.9 1211 32.9
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 1.6e-147 528.1 932 37.1
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 3.3e-145 520.4 376 70.5
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 1.6e-144 518.1 776 41.9
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 1.1e-143 515.4 466 59.2
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 1.5e-142 511.5 926 35.9
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 1.3e-130 471.9 833 37.8
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 9.6e-129 465.7 775 39.2
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.8e-127 461.5 805 37.5
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 2.0e-126 458.0 1056 32.1
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 3.7e-120 437.2 860 36.2
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 3.8e-117 427.2 346 65.9
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.4e-116 425.2 491 48.1
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 1.8e-111 408.3 514 46.3
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 9.4e-108 396.0 1271 27.9
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 1.7e-104 385.2 465 44.9
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 7.2e-100 369.8 690 35.5
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 1.1e-95 355.9 474 42.6
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 8.5e-93 346.3 412 44.9
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 3.6e-91 340.9 770 32.7
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 1.5e-84 318.9 1158 26.3
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 1.2e-81 309.3 215 70.7
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.2e-81 309.3 554 34.8
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 7.5e-81 306.6 557 36.3
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 1.0e-77 296.2 511 35.6
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.4e-74 285.8 733 31.4
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 4.0e-66 257.7 512 35.4
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 3.9e-61 241.1 196 65.8
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 5.6e-60 237.3 336 42.6
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 2.4e-47 195.3 285 40.0
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 3.2e-47 194.9 180 53.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 6.0e-46 190.7 852 26.1
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 9.5e-44 183.3 271 38.7
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 8.1e-43 180.3 246 39.0
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 1.1e-42 179.9 307 35.5
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 2.3e-42 178.7 1035 23.3
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 2.6e-41 175.3 159 54.1
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 2.6e-41 175.3 159 54.1
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 2.4e-39 168.7 264 37.9
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 4.4e-33 147.9 211 40.3
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.3e-32 146.4 150 46.7
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 1.9e-31 142.5 140 50.0
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.2e-31 141.7 189 41.3
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 3.3e-28 131.7 141 44.0
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.1e-27 129.0 128 50.8
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 2.4e-23 115.5 104 57.7
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 9.3e-23 113.6 140 45.0
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 1.5e-17 96.3 93 51.6
Os01g0886000 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 8.7e-13 80.5 141 34.0
CANSAT25G3888 Cannabis sativa HOM05D002497 ORTHO05D002697 5.6e-12 77.8 251 25.5
Migut.C01356 Erythranthe guttata HOM05D002497 ORTHO05D002697 5.6e-12 77.8 142 30.3
Os05g0420200 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 2.1e-11 75.9 135 32.6
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 2.1e-11 75.9 101 41.6
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 6.2e-11 74.3 149 32.2
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 8.1e-11 73.9 143 30.1
Zm00001eb366020 Zea mays HOM05D002497 ORTHO05D002697 1.8e-10 72.8 142 30.3
Oeu023207.2 Olea europaea HOM05D002497 ORTHO05D002697 2.4e-10 72.4 143 30.1
Peaxi162Scf00078g00248 Petunia axillaris HOM05D002497 ORTHO05D002697 2.4e-10 72.4 142 29.6
MSTRG.1584 Avicennia marina HOM05D002497 ORTHO05D002697 3.1e-10 72.0 142 29.6
Sed0011145 Sechium edule HOM05D002497 ORTHO05D002697 3.1e-10 72.0 142 30.3
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 4.0e-10 71.6 64 64.1
Psat1g003240 Pisum sativum HOM05D002497 ORTHO05D002697 4.0e-10 71.6 142 27.5
ECA247G3374 Erigeron canadensis HOM05D002497 ORTHO05D002697 6.9e-10 70.9 142 29.6
Lsat_1_v5_gn_1_25241 Lactuca sativa HOM05D002497 ORTHO05D002697 6.9e-10 70.9 142 30.3
PGR042G2340 Punica granatum HOM05D002497 ORTHO05D002697 6.9e-10 70.9 139 28.8
HanXRQChr02g0037051 Helianthus annuus HOM05D002497 ORTHO05D002697 9.0e-10 70.5 142 28.9
SalBow6G3049 Salvia bowleyana HOM05D002497 ORTHO05D002697 1.2e-09 70.1 142 28.2
SalBow6G3547 Salvia bowleyana HOM05D002497 ORTHO05D002697 1.2e-09 70.1 142 28.2
SalBow7G1521 Salvia bowleyana HOM05D002497 ORTHO05D002697 1.2e-09 70.1 143 28.0
SGA_v2.0_scaffold118G32587 Striga asiatica HOM05D002497 ORTHO05D002697 2.0e-09 69.3 146 28.8
BcaC08g43841 Brassica carinata HOM05D002497 ORTHO05D002697 5.8e-09 67.8 142 28.9
FvH4_6g37553 Fragaria vesca HOM05D005682 ORTHO05D007050 5.8e-09 67.8 71 52.1
CAN.G34.19 Capsicum annuum HOM05D002497 ORTHO05D002697 7.6e-09 67.4 135 28.9
C06p12230 Brassica napus HOM05D002497 ORTHO05D002697 1.0e-08 67.0 142 28.9
BolC6t36367H Brassica oleracea HOM05D002497 ORTHO05D002697 1.0e-08 67.0 142 28.9
A09p32660 Brassica napus HOM05D002497 ORTHO05D002697 1.3e-08 66.6 142 28.9
BraA09t38805Z Brassica rapa HOM05D002497 ORTHO05D002697 1.3e-08 66.6 142 28.9
Eucgr.F02964 Eucalyptus grandis HOM05D002497 ORTHO05D002697 1.3e-08 66.6 143 28.0
Mapoly0072s0055 Marchantia polymorpha HOM05D002497 ORTHO05D002697 1.3e-08 66.6 140 30.7
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 1.7e-08 66.2 140 28.6
SHI16731 Sapria himalayana HOM05D002497 ORTHO05D002697 2.2e-08 65.9 135 30.4
BcaB07g33008 Brassica carinata HOM05D002497 ORTHO05D002697 4.9e-08 64.7 142 28.2
C05p44840 Brassica napus HOM05D005682 ORTHO05D007050 4.9e-08 64.7 38 63.2
Gohir.A02G087500 Gossypium hirsutum HOM05D002497 ORTHO05D002697 8.4e-08 63.9 142 26.8
SGA_v2.0_scaffold24G10626 Striga asiatica HOM05D002497 ORTHO05D002697 1.4e-07 63.2 137 28.5
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 1.4e-07 63.2 143 31.5
Pp3c11_23680 Physcomitrium patens HOM05D002497 ORTHO05D002697 1.9e-07 62.8 133 30.1
Rhsim12G0004500 Rhododendron simsii HOM05D002497 ORTHO05D002697 1.9e-07 62.8 137 29.2
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 2.5e-07 62.4 89 38.2
Gohir.D02G102400 Gossypium hirsutum HOM05D002497 ORTHO05D002697 2.5e-07 62.4 142 26.1
Gorai.005G116200 Gossypium raimondii HOM05D002497 ORTHO05D002697 2.5e-07 62.4 142 26.1
vmacro00923 Vaccinium macrocarpon HOM05D002497 ORTHO05D002697 9.3e-07 60.5 137 29.9
vmacro22751 Vaccinium macrocarpon HOM05D002497 ORTHO05D002697 9.3e-07 60.5 137 29.9
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 1.2e-06 60.1 115 34.8


User provided reference genes

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