Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.3e-105 386.3 187 100.0
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 6.9e-91 337.4 188 88.8
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 4.5e-90 334.7 188 87.8
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 7.6e-90 334.0 188 88.3
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 5.0e-89 331.3 188 86.7
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 3.0e-86 322.0 188 84.0
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 3.7e-84 315.1 188 83.5
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 4.8e-84 314.7 189 84.1
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 1.1e-83 313.5 188 83.5
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 3.1e-83 312.0 189 83.6
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 5.5e-80 301.2 186 81.2
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 2.0e-53 213.0 197 57.4
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 1.3e-52 210.3 178 62.9
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 4.8e-52 208.4 189 57.1
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.3e-52 208.0 180 61.1
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.1e-51 207.2 210 55.7
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.1e-51 207.2 175 63.4
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.4e-51 206.8 171 62.0
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 1.4e-51 206.8 171 60.8
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 1.8e-51 206.5 189 55.6
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.8e-51 206.5 190 60.0
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 2.4e-51 206.1 190 56.8
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 5.4e-51 204.9 191 55.5
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 7.0e-51 204.5 191 58.6
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 9.1e-51 204.1 196 56.6
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.2e-50 203.8 190 57.9
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 1.2e-50 203.8 190 57.9
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.6e-50 203.4 197 56.3
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.6e-50 203.4 203 54.2
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.0e-50 203.0 190 57.4
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 2.7e-50 202.6 187 56.7
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 5.9e-50 201.4 173 60.1
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 1.0e-49 200.7 216 51.9
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 1.0e-49 200.7 182 54.4
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 1.7e-49 199.9 163 62.6
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 3.8e-49 198.7 123 81.3
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 8.5e-49 197.6 185 58.4
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 1.5e-48 196.8 191 53.9
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.5e-48 196.8 169 59.2
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 4.2e-48 195.3 127 70.1
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 4.2e-48 195.3 127 70.1
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 5.5e-48 194.9 163 58.3
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 6.1e-47 191.4 182 56.6
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 8.0e-47 191.0 170 55.3
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.0e-46 190.7 160 60.6
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 2.3e-46 189.5 191 53.9
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 4.0e-46 188.7 187 56.1
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 4.0e-46 188.7 172 55.8
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 5.2e-46 188.3 165 57.6
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 2.6e-45 186.0 190 53.2
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 2.6e-45 186.0 188 56.4
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 3.4e-45 185.7 180 53.9
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 2.2e-44 183.0 164 58.5
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 3.7e-44 182.2 197 53.3
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 2.4e-43 179.5 170 54.1
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 3.1e-43 179.1 182 54.9
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 3.1e-43 179.1 187 52.4
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 2.7e-42 176.0 126 65.1
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 2.7e-42 176.0 109 69.7
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 3.5e-42 175.6 196 51.5
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 5.9e-42 174.9 179 54.2
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 5.9e-42 174.9 97 79.4
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 7.7e-42 174.5 178 53.4
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 7.7e-42 174.5 188 52.1
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 1.0e-41 174.1 174 54.0
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.0e-41 174.1 156 58.3
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.7e-41 173.3 168 56.0
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 1.7e-41 173.3 107 73.8
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 2.3e-41 172.9 177 54.2
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.9e-41 172.6 169 53.8
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 3.8e-41 172.2 168 54.2
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 3.8e-41 172.2 175 55.4
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 6.6e-41 171.4 190 50.5
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 8.6e-41 171.0 174 51.7
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 8.6e-41 171.0 175 54.9
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 8.6e-41 171.0 175 54.9
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 3.3e-40 169.1 124 64.5
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 4.3e-40 168.7 172 52.9
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.2e-40 167.9 168 53.0
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.2e-39 167.2 116 67.2
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.2e-39 167.2 183 50.3
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 2.1e-39 166.4 125 62.4
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 2.8e-39 166.0 187 51.3
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 8.0e-39 164.5 117 65.0
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 8.0e-39 164.5 191 47.1
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.8e-38 163.3 95 73.7
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.5e-37 160.2 143 53.8
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.0e-37 159.8 128 60.2
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 5.7e-37 158.3 119 63.9
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 2.2e-36 156.4 177 47.5
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 2.9e-36 156.0 122 61.5
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 8.3e-36 154.5 152 52.0
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 7.8e-34 147.9 87 73.6
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 1.7e-33 146.7 123 57.7
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.6e-33 144.8 77 81.8
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 3.1e-30 136.0 113 56.6
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 3.1e-30 136.0 177 46.3
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.5e-29 133.7 136 52.9
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 2.0e-29 133.3 111 57.7
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.6e-29 132.9 146 50.0
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 5.8e-29 131.7 142 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 6.4e-28 128.3 110 51.8
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.3e-25 120.6 122 48.4
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 8.6e-25 117.9 125 48.0
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 3.3e-24 115.9 87 55.2
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 5.6e-24 115.2 191 39.3
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 2.0e-21 106.7 128 50.8
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 4.4e-21 105.5 125 52.0
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 7.1e-19 98.2 195 37.4
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 4.3e-16 89.0 66 60.6
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.8e-15 86.3 67 64.2
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 3.6e-15 85.9 125 44.0
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.5e-13 80.5 121 40.5
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 5.8e-13 78.6 112 42.0
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 5.2e-06 55.5 62 35.5


User provided reference genes

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