Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 2134.4 1077 100.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1944.5 1087 90.0
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1929.5 1087 89.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1927.9 1087 89.1
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1925.6 1087 88.9
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1920.2 1087 88.7
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1916.0 1087 88.6
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1899.4 1097 87.1
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1897.5 1087 87.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1894.4 1087 87.8
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1892.1 1087 87.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1884.4 1088 87.3
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1884.0 1087 87.2
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1882.8 1087 86.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1880.9 1087 87.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1866.7 1099 85.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1850.9 1086 85.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1850.5 1149 82.2
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1843.9 1087 85.1
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1833.9 1087 84.5
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1830.8 1089 84.5
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1828.1 1090 84.1
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1823.5 1087 84.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1818.9 1090 84.0
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1791.9 1091 83.3
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1785.4 1077 83.3
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1785.4 1088 82.9
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1781.9 1088 82.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1777.7 1088 82.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1774.6 1088 82.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1767.7 1088 82.4
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1703.7 1090 77.9
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1669.8 1096 77.3
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1099 77.2
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1099 77.1
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1666.4 1098 77.1
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1664.8 1081 77.2
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1658.3 1099 76.8
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1657.9 1036 79.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1653.6 1088 76.6
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1082 77.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1115 74.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1097 76.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1037 78.0
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1641.7 1093 76.3
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1040 79.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1124 74.7
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1638.6 1103 75.3
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1085 76.3
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1081 75.8
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1081 75.6
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1093 75.0
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1628.2 1093 75.2
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1627.8 1094 75.2
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1627.8 1073 76.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1092 74.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1622.1 1084 76.5
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1622.1 1092 74.6
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1093 74.8
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1094 74.7
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1178 71.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1042 76.0
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1103 73.2
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1082 74.6
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 1079 74.4
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1091 73.9
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1019 77.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1038 76.4
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1091 73.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1044 76.1
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1593.2 1011 77.2
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1065 74.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1592.0 1035 76.0
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1589.7 1075 74.3
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1083 73.9
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1588.5 1091 73.1
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1038 75.2
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1073 73.9
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1068 74.5
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1587.0 1084 73.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1585.5 1069 74.4
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1584.3 1037 75.7
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1098 72.4
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1578.5 1037 74.8
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1577.8 1089 72.8
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1574.3 1061 74.0
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1573.9 1099 71.9
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 1048 74.2
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1572.8 1007 76.6
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1571.6 1099 72.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1099 71.8
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1565.1 1012 75.4
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1558.9 988 76.2
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1554.7 1013 74.7
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1548.1 1082 71.7
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1540.4 1081 72.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1539.2 1010 74.6
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1538.5 1022 74.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1535.0 1014 73.8
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1533.9 1079 72.0
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1533.1 1148 68.2
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1531.5 1118 69.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1520.4 1033 73.6
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1517.3 1047 72.5
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1475.3 1061 69.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1463.0 1124 67.8
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1446.4 969 74.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1411.0 1089 68.5
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1409.8 1030 67.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1408.7 920 75.0
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1390.6 875 77.8
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1383.2 1014 69.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1358.2 1004 65.5
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1330.1 1094 65.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1327.8 1094 65.0
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1323.1 963 67.1
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1271.5 804 77.1
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1241.5 1029 61.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1226.5 722 85.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1161.0 1081 57.4
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 772 70.7
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1116.7 748 74.5
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1112.8 1014 54.2
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1087.0 751 73.8
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.5e-310 1069.7 1067 52.3
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.2e-309 1066.6 1005 54.0
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 5.3e-284 981.5 739 66.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 6.0e-272 941.4 887 56.1
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 9.0e-260 901.0 876 55.3
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-257 892.5 774 57.6
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 9.7e-254 880.9 585 72.5
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.3e-246 855.9 596 72.5
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-234 817.0 973 43.9
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.5e-209 733.4 671 55.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.0e-190 670.6 646 56.2
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.6e-185 652.5 417 77.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 5.6e-185 652.5 623 54.7
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.2e-172 610.1 421 73.4
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.4e-164 582.8 510 63.7
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-160 570.9 538 57.8
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.8e-158 562.8 415 68.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.3e-149 535.0 1034 35.5
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 6.5e-149 532.7 347 78.4
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 5.5e-148 529.6 393 64.1
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.1e-148 529.3 474 62.4
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 3.8e-133 480.3 397 62.7
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 8.2e-128 462.6 309 71.8
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.5e-125 453.0 351 64.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.4e-122 445.3 401 60.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.8e-103 381.7 999 29.9
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.9e-102 376.7 280 72.9
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 8.5e-101 372.9 227 80.2
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 8.5e-101 372.9 989 28.0
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.0e-98 364.0 968 28.3
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 9.2e-87 326.2 916 28.8
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.2e-79 299.7 160 87.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 3.6e-59 234.6 222 54.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 8.7e-53 213.4 865 23.5
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 4.3e-52 211.1 310 43.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.6e-51 209.1 332 34.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.3e-43 183.0 124 73.4
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.1e-43 182.2 219 52.1
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 6.2e-43 180.6 154 63.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.8e-41 174.1 143 59.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-40 172.2 150 58.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.1e-36 159.8 149 57.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 3.7e-35 154.8 279 36.6
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.0e-32 146.7 469 25.6
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.4e-31 142.9 134 59.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-30 139.4 162 42.6
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.5e-28 132.1 431 27.1
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 2.2e-24 119.0 111 53.2
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.2e-22 113.2 159 45.9
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.7e-22 112.1 290 24.8
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-21 109.4 79 64.6
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.9e-16 92.0 83 60.2
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.6e-12 79.0 54 63.0
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.2e-11 75.9 56 62.5
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.8e-10 72.8 51 62.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.3e-08 66.6 45 66.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.1e-07 63.5 73 46.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 3.2e-07 62.0 77 45.5
C01p45010 Brassica napus HOM05D003855 ORTHO05D097401 2.1e-06 59.3 37 81.1
A02p03970 Brassica napus HOM05D018909 ORTHO05D016798 4.7e-06 58.2 51 68.6
A05p09840 Brassica napus HOM05D018909 ORTHO05D016798 4.7e-06 58.2 51 68.6


User provided reference genes

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