Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 2.5e-240 835.1 441 100.0
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.5e-136 490.3 494 61.3
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 3.4e-128 462.6 487 59.1
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 9.8e-128 461.1 487 61.2
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 6.6e-124 448.4 472 60.0
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 5.0e-116 422.2 487 54.6
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.5e-112 410.6 486 54.1
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 2.9e-103 379.8 426 56.8
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 9.2e-102 374.8 421 56.3
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 9.2e-102 374.8 420 56.9
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 2.1e-101 373.6 424 56.6
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 3.5e-101 372.9 421 56.3
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 3.5e-101 372.9 421 56.3
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 3.0e-100 369.8 431 56.6
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 9.9e-96 354.8 422 55.5
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 1.3e-95 354.4 422 55.5
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 8.3e-95 351.7 412 57.3
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 4.6e-93 345.9 434 55.1
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 6.0e-93 345.5 410 56.6
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.2e-80 304.7 468 46.2
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.1e-62 245.0 420 44.0
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.0e-39 168.7 546 31.1
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 1.7e-39 167.9 632 31.0
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.1e-38 165.2 546 31.1
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.2e-37 161.8 546 30.6
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.6e-37 161.4 607 30.5
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 1.0e-36 158.7 556 30.6
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 3.0e-36 157.1 634 29.5
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 2.0e-35 154.5 566 29.5
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 4.8e-34 149.8 513 32.9
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 8.2e-34 149.1 615 27.6
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 8.2e-34 149.1 518 32.2
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.1e-33 146.7 632 27.8
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 4.1e-33 146.7 601 29.5
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 7.0e-33 146.0 511 30.9
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.0e-32 144.4 562 29.2
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 4.5e-32 143.3 615 28.3
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 7.7e-32 142.5 583 28.6
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 7.7e-32 142.5 611 27.7
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.3e-31 141.7 602 27.9
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 3.8e-31 140.2 561 29.1
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 5.0e-31 139.8 611 30.0
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.9e-30 137.9 634 27.6
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.2e-30 136.7 520 29.6
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 5.5e-30 136.3 528 30.9
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 9.4e-30 135.6 634 27.6
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.2e-29 135.2 493 31.0
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 3.6e-29 133.7 564 29.1
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 4.7e-29 133.3 624 30.0
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.0e-28 132.1 504 30.2
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 1.4e-28 131.7 557 30.0
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.8e-28 131.3 504 30.2
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.0e-28 130.6 489 29.9
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 3.0e-28 130.6 595 28.4
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 3.0e-28 130.6 628 28.5
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 4.0e-28 130.2 525 29.7
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.1e-27 128.6 527 29.4
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.5e-27 128.3 425 30.8
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 1.5e-27 128.3 609 27.4
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.5e-27 128.3 601 28.8
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 2.6e-27 127.5 425 30.6
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 3.3e-27 127.1 493 29.2
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 7.5e-27 125.9 514 29.8
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 9.7e-27 125.6 613 28.7
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 1.4e-25 121.7 406 32.3
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 1.8e-25 121.3 601 28.0
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.4e-25 120.9 591 27.6
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 3.1e-25 120.6 582 28.2
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.1e-25 120.2 464 30.4
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.1e-25 120.2 578 27.0
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.1e-25 120.2 578 27.0
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.1e-25 120.2 578 27.0
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 7.0e-25 119.4 603 28.2
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 7.0e-25 119.4 611 27.5
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-24 118.6 457 29.5
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 1.6e-24 118.2 457 29.5
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 2.7e-24 117.5 511 28.0
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 4.5e-24 116.7 543 28.5
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 4.5e-24 116.7 546 28.9
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.3e-23 115.2 557 28.2
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.3e-23 115.2 521 28.0
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.2e-23 114.4 518 27.8
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.2e-23 114.4 476 30.0
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 2.9e-23 114.0 497 28.4
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 2.9e-23 114.0 530 28.1
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 2.9e-23 114.0 621 27.7
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 3.8e-23 113.6 514 27.6
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 8.5e-23 112.5 589 27.2
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 8.5e-23 112.5 581 27.2
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 8.5e-23 112.5 594 26.6
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 1.5e-22 111.7 592 26.5
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 1.5e-22 111.7 444 28.4
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 1.5e-22 111.7 476 30.5
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 1.9e-22 111.3 594 27.4
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 2.5e-22 110.9 523 30.0
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 2.5e-22 110.9 580 26.6
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 3.2e-22 110.5 504 28.4
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 3.2e-22 110.5 454 30.0
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.2e-22 110.2 602 27.1
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 4.2e-22 110.2 558 27.8
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.6e-21 108.2 515 28.0
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 2.7e-21 107.5 588 26.5
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 3.6e-21 107.1 331 32.0
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 6.1e-21 106.3 459 30.1
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.4e-20 105.1 541 26.2
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.8e-20 104.8 595 27.7
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 4.0e-20 103.6 535 29.3
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 5.2e-20 103.2 584 26.4
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 5.2e-20 103.2 538 27.3
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 6.8e-20 102.8 569 27.2
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 6.8e-20 102.8 556 29.5
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 8.8e-20 102.4 544 27.4
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 8.8e-20 102.4 537 26.1
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 1.2e-19 102.1 557 26.6
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.2e-19 102.1 612 27.0
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 2.6e-19 100.9 437 26.5
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 3.4e-19 100.5 448 27.2
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 9.8e-19 99.0 513 27.1
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 2.8e-18 97.4 497 27.6
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 4.8e-18 96.7 550 27.1
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 1.1e-17 95.5 423 29.1
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 4.1e-17 93.6 600 27.3
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 7.0e-17 92.8 504 28.4
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 9.1e-17 92.4 519 27.9
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 3.5e-16 90.5 557 27.1
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 5.9e-16 89.7 455 27.0
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 1.0e-15 89.0 445 29.2
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 2.2e-15 87.8 596 26.5
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 2.9e-15 87.4 507 27.4
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 8.5e-15 85.9 487 27.7
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 1.1e-14 85.5 563 27.0
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.5e-14 85.1 589 25.5
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 1.5e-14 85.1 518 26.3
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.9e-14 84.7 376 27.9
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.9e-14 84.7 566 26.9
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 5.5e-14 83.2 365 29.9
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.1e-13 81.3 440 26.1
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 2.7e-13 80.9 371 29.6
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 2.7e-13 80.9 424 29.2
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 3.6e-13 80.5 588 25.5
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.7e-13 80.1 361 28.5
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.0e-12 79.0 434 24.9
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 8.8e-12 75.9 387 26.9
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 4.4e-11 73.6 442 27.1
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 2.2e-10 71.2 351 24.8
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 4.9e-10 70.1 446 24.7
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 4.9e-10 70.1 369 25.7
HanXRQChr03g0079381 Helianthus annuus HOM05D003079 ORTHO05D003461 2.4e-09 67.8 236 28.8
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 9.2e-09 65.9 418 26.6
C03p63130 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-08 65.5 60 61.7
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.7e-08 64.3 188 31.4
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 5.9e-08 63.2 625 22.2
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 5.9e-08 63.2 314 26.4
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 7.7e-08 62.8 160 31.9
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 2.3e-07 61.2 605 22.8
Ah.06g180930 Amaranthus hybridus HOM05D003079 ORTHO05D003461 5.0e-07 60.1 478 23.6
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 8.6e-07 59.3 489 23.9
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 2.5e-06 57.8 292 26.7
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 3.3e-06 57.4 276 25.4
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 4.3e-06 57.0 194 28.4
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 5.6e-06 56.6 185 30.3


User provided reference genes

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