Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 3546.9 1805 100.0
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 3237.6 1811 90.6
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 3229.1 1813 90.3
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 3214.5 1810 89.8
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 3212.9 1811 89.6
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 3206.0 1808 89.3
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 3201.4 1813 89.8
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 3200.6 1809 89.2
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 3197.9 1812 89.2
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 3197.1 1809 89.1
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 3195.2 1811 89.3
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 3186.7 1812 89.2
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 3184.4 1811 89.0
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 3038.4 1810 84.3
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2758.0 1819 76.1
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2689.1 1823 74.5
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2686.8 1818 74.2
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2678.7 1819 73.9
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2674.0 1821 73.5
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2672.5 1818 73.7
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2670.2 1821 74.0
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2663.6 1806 73.8
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2662.5 1820 73.0
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2652.1 1824 73.6
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2651.7 1819 72.8
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2649.4 1767 75.3
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2639.0 1820 72.9
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2637.8 1820 73.0
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2637.4 1819 73.2
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2635.5 1820 73.0
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2635.5 1820 73.0
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2634.0 1831 72.6
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2632.8 1820 72.9
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2632.8 1819 72.8
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2622.8 1820 72.8
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2621.3 1818 72.6
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2614.3 1806 72.8
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2614.3 1772 74.2
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2599.7 1818 71.4
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2585.8 1837 71.4
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2582.4 1929 68.9
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2580.4 1820 71.3
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2572.0 1821 72.2
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2570.4 1975 66.9
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2566.6 1820 70.5
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2563.5 1819 70.1
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2563.1 1820 70.1
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2558.9 1820 70.2
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2547.3 1821 70.3
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2545.4 1819 69.8
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2545.0 1859 70.3
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2544.2 1818 70.0
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2538.1 1818 69.6
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2537.3 1818 69.9
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2534.6 1818 69.7
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2534.2 1819 70.0
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2532.7 1818 69.8
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2532.3 1814 70.3
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2527.3 1820 69.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2526.9 1815 69.9
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2520.7 1829 69.6
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2520.0 1757 72.2
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2508.0 1813 69.3
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2507.6 1824 69.5
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2492.2 1818 68.0
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2489.9 1817 69.0
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2489.1 1815 68.2
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2486.4 1899 66.1
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2480.3 1819 68.7
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2479.5 1816 68.4
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2478.4 1763 70.6
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2462.2 1677 74.2
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2449.9 1832 67.1
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2446.8 1821 67.7
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2446.0 1803 68.7
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2444.5 1810 68.3
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2439.8 1820 66.9
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2433.7 1819 67.3
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2431.4 1813 67.9
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2425.6 1846 66.9
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2409.0 1890 65.6
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2380.9 1792 67.7
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2379.0 1835 66.9
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2365.1 1826 66.0
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2346.2 1947 63.0
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2338.5 1840 64.4
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2338.5 1855 64.2
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2332.0 1815 65.7
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2325.8 1817 65.4
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2294.2 1908 63.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2268.8 1820 62.7
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2265.7 1626 70.5
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2245.7 1831 62.3
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2220.3 1651 69.0
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2195.6 1567 72.0
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2132.5 1741 65.1
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2111.3 1684 64.8
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2085.1 1514 68.6
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2048.9 1439 70.2
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2044.6 1818 57.5
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1729.9 1250 70.3
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1726.1 1149 73.8
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1725.7 1451 61.7
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1656.3 1818 51.3
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1392.9 948 71.9
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1390.2 1932 41.5
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1371.7 1862 42.6
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1358.6 1860 41.8
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1312.0 1875 40.0
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1222.6 1834 39.0
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1204.5 1855 38.2
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1180.6 1829 37.8
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1134.8 861 67.9
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.2e-304 1050.8 1828 35.1
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 1.2e-296 1024.2 948 58.5
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 3.0e-292 1009.6 721 68.4
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 2.0e-272 943.7 1974 33.0
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 3.5e-248 863.2 1171 46.0
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 1.3e-247 861.3 694 60.4
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.8e-199 701.4 504 70.2
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.2e-158 565.8 615 54.1
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.8e-135 486.9 459 53.6
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 3.3e-129 468.0 639 46.0
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 8.6e-122 443.4 337 67.1
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.5e-121 442.6 1911 24.8
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 3.4e-110 404.8 313 66.1
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 7.1e-108 397.1 467 47.1
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 2.4e-103 382.1 220 78.2
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.2e-102 379.8 303 62.4
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 6.9e-95 354.0 269 66.5
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 7.6e-94 350.5 251 73.7
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.1e-81 310.1 1934 22.6
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.2e-78 300.1 360 50.3
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.0e-78 299.3 225 63.1
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 7.4e-73 280.8 166 77.1
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 7.2e-68 264.2 345 46.7
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 7.0e-39 167.9 100 83.0
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.6e-35 156.8 1340 20.7
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.1e-35 154.8 138 60.1
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.4e-33 149.1 210 43.8
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 7.0e-31 141.4 2011 19.4
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 2.7e-22 112.8 74 64.9
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 1.1e-20 107.5 115 58.3
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 9.5e-20 104.4 75 68.0
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 4.7e-19 102.1 76 60.5
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.4e-18 100.5 65 78.5
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 5.8e-17 95.1 121 50.4
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 7.5e-17 94.7 63 79.4
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 1.4e-15 90.5 160 42.5
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 4.6e-14 85.5 163 39.9
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 2.1e-11 76.6 96 45.8
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 4.0e-10 72.4 45 66.7
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.2e-10 72.0 84 35.7
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 2.0e-09 70.1 77 55.8
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 3.4e-09 69.3 68 48.5


User provided reference genes

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