Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1953.7 1007 100.0
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1486.5 1025 77.1
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1462.6 1025 75.8
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1443.3 1040 75.0
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1442.2 1027 74.9
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1442.2 1024 75.1
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1440.2 1027 74.6
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1439.1 1026 75.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1434.5 1026 74.6
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1434.5 1026 74.6
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1431.4 1026 74.3
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1420.2 1027 74.2
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 0.0e+00 1207.6 1108 61.8
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1163.7 1089 61.8
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 0.0e+00 1154.8 1077 61.6
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1153.3 1079 62.1
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 0.0e+00 1139.8 771 77.7
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1136.3 1088 60.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1129.4 1076 60.1
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1125.5 1076 60.7
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1125.5 1076 60.7
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1123.6 1076 60.3
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1120.5 1076 60.6
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1115.9 1131 58.5
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1106.7 1091 59.6
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1104.0 1111 58.5
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1100.9 1026 62.2
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 3.4e-261 905.6 1131 48.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.5e-261 905.2 1119 49.6
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 1.0e-260 904.0 1139 48.5
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 9.3e-259 897.5 1134 47.9
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 2.7e-258 896.0 1118 48.3
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 5.1e-257 891.7 1120 47.5
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.9e-256 889.8 1124 47.6
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.3e-256 889.0 1114 47.6
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.3e-255 887.1 1124 47.2
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 1.6e-255 886.7 1114 47.5
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.8e-254 883.2 1115 47.2
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.1e-254 882.5 1099 48.6
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 5.9e-253 878.2 1106 48.4
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 8.5e-252 874.4 1125 47.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 5.7e-248 861.7 1102 48.4
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.6e-247 860.1 1064 49.2
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 1.8e-246 856.7 1121 47.3
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 4.5e-245 852.0 1109 47.0
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 5.9e-245 851.7 1105 46.6
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 2.2e-244 849.7 1089 47.1
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 5.0e-244 848.6 1108 46.3
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.1e-240 837.4 1103 46.5
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 3.7e-239 832.4 1102 46.6
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 6.3e-239 831.6 1042 47.4
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.1e-238 828.9 1102 45.4
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 5.3e-238 828.6 1141 44.7
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.6e-237 826.2 1102 46.5
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 5.9e-237 825.1 1108 45.0
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.3e-236 823.9 1101 45.4
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 3.2e-235 819.3 1122 45.1
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 9.4e-235 817.8 1104 45.6
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 7.9e-234 814.7 1123 44.0
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 5.2e-233 812.0 1130 45.3
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.2e-233 812.0 989 49.9
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 4.4e-232 808.9 1115 44.7
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 9.7e-232 807.7 1106 45.6
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 6.3e-231 805.1 1117 44.4
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.2e-229 800.8 1150 44.7
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.2e-229 800.8 996 47.7
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.2e-229 800.8 1115 45.6
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.6e-229 799.7 1121 45.8
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.0e-228 797.7 1117 43.7
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.2e-226 790.8 1084 45.7
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 2.1e-226 790.0 1082 45.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.4e-225 787.3 1132 42.9
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 7.5e-224 781.6 1051 46.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.2e-223 780.0 1087 45.4
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 3.7e-223 779.2 1123 43.0
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.1e-222 777.7 1135 44.1
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.0e-222 775.0 959 49.7
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 7.0e-222 775.0 1120 42.8
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 2.7e-221 773.1 1143 42.5
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 7.7e-221 771.5 1068 44.2
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.7e-220 770.4 1141 42.6
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 3.2e-219 766.1 1138 42.8
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 2.7e-218 763.1 1124 42.5
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 8.0e-218 761.5 1109 43.2
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 1.5e-216 757.3 1083 44.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.8e-215 753.1 951 47.9
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.4e-214 750.7 1128 43.4
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.3e-212 744.2 1101 42.2
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.9e-212 743.0 1114 42.0
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.9e-212 743.0 1187 41.1
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 5.0e-212 742.3 1135 42.0
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.2e-210 737.6 1102 42.6
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 6.1e-210 735.3 1061 42.7
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 6.1e-210 735.3 958 46.0
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.8e-209 733.8 1147 41.3
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 2.3e-209 733.4 1128 41.8
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.3e-209 733.4 1130 43.1
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 4.1e-206 722.6 1067 44.2
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 5.4e-206 722.2 1137 42.5
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 5.9e-205 718.8 1104 41.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 7.3e-203 711.8 1087 42.5
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.1e-198 698.0 878 47.4
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.3e-196 691.0 1113 41.0
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.1e-195 688.0 1109 40.2
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.9e-188 662.9 1113 40.2
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.9e-182 644.0 666 53.6
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 3.2e-182 643.3 1119 39.8
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.8e-181 638.6 711 51.6
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 4.3e-179 632.9 668 54.2
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.1e-178 630.6 508 65.6
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.9e-175 620.2 692 52.2
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.4e-174 617.8 1157 37.1
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 7.1e-174 615.5 787 46.8
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.2e-168 598.2 444 67.3
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 2.9e-167 593.6 812 46.4
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 7.1e-166 589.0 672 50.4
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 7.1e-166 589.0 888 43.5
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 7.8e-165 585.5 668 53.0
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 8.7e-164 582.0 571 55.7
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.1e-158 565.1 847 42.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.2e-151 540.8 898 40.9
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.1e-150 538.5 1091 36.0
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.3e-148 531.6 638 48.9
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 2.5e-147 527.3 882 40.1
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 1.6e-138 498.0 933 38.0
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 2.4e-137 494.2 995 37.1
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 4.8e-122 443.4 658 41.3
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.7e-114 417.2 268 78.0
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.7e-114 417.2 268 78.0
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 4.7e-109 400.2 671 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 6.1e-93 346.7 326 54.3
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.1e-84 317.8 206 76.2
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.0e-75 288.5 417 42.2
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 2.0e-67 261.9 661 32.7
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.7e-61 240.7 590 31.5
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-60 239.2 590 31.4
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 6.4e-58 230.3 221 52.0
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 3.4e-51 208.0 158 68.4
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 7.6e-43 180.3 579 29.0
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.6e-37 162.5 182 52.7
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.1e-36 158.3 648 27.5
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 5.3e-36 157.5 138 56.5
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 3.4e-35 154.8 91 82.4
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 8.4e-34 150.2 588 27.6
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 3.7e-29 134.8 159 52.8
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 4.0e-28 131.3 88 70.5
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 7.1e-25 120.6 382 29.3
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.9e-18 98.6 126 52.4
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 2.5e-17 95.5 176 35.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 3.6e-16 91.7 114 55.3
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 4.6e-16 91.3 319 28.5
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.4e-15 89.7 163 34.4
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 2.8e-13 82.0 107 52.3
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 3.7e-13 81.6 129 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 7.9e-08 63.9 204 30.4
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 4.4e-06 58.2 179 28.5


User provided reference genes

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