Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 0.0e+00 1747.6 957 100.0
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 6.7e-283 977.6 954 63.6
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 1.3e-270 936.8 950 61.3
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 5.2e-259 898.3 951 60.1
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 4.7e-252 875.2 956 61.0
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 3.4e-250 869.0 956 60.7
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 5.4e-248 861.7 958 60.0
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 1.9e-240 836.6 781 64.9
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 1.0e-238 830.9 956 57.2
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 3.0e-238 829.3 781 64.8
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 1.1e-232 810.8 847 62.2
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 2.4e-232 809.7 777 63.7
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 3.9e-230 802.4 848 61.8
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.3e-204 717.6 964 50.8
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 6.6e-121 439.5 1030 39.9
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 9.5e-120 435.6 1032 38.8
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 1.5e-117 428.3 1026 38.5
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 9.9e-109 399.1 1025 36.8
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 5.4e-107 393.3 1023 36.7
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.2e-106 392.1 1000 36.8
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 3.5e-106 390.6 1005 36.3
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.5e-104 385.2 1033 36.7
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.9e-104 384.8 1026 36.5
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 2.1e-103 381.3 997 36.2
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.1e-102 379.0 1018 38.2
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 6.9e-102 376.3 1018 38.0
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 3.4e-101 374.0 1015 37.8
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 4.5e-101 373.6 1019 35.4
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.8e-101 373.2 981 36.6
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.4e-99 366.7 984 36.4
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.1e-99 366.3 984 36.1
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.9e-98 362.8 986 35.9
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 3.9e-97 360.5 1008 33.8
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 1.1e-96 359.0 850 40.2
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 4.3e-96 357.1 953 34.7
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 5.6e-96 356.7 1058 34.5
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 9.6e-96 355.9 880 36.2
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.6e-95 355.1 1043 34.2
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 3.7e-95 354.0 998 36.8
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 6.2e-95 353.2 1043 34.2
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 2.4e-94 351.3 887 35.5
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 3.1e-94 350.9 890 36.1
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 4.0e-94 350.5 1002 35.2
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.6e-93 347.8 1070 33.6
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 2.9e-92 344.4 1004 36.5
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 5.5e-91 340.1 1013 34.9
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 9.3e-91 339.3 1013 33.4
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 7.9e-90 336.3 914 36.7
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 4.3e-88 330.5 999 36.0
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.3e-87 328.9 1022 32.8
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 6.2e-87 326.6 992 34.6
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.8e-86 325.1 937 34.9
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 2.4e-86 324.7 999 35.2
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 9.0e-86 322.8 991 36.0
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 2.6e-85 321.2 999 34.0
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 4.5e-85 320.5 901 35.7
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 5.8e-85 320.1 988 35.5
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 5.8e-85 320.1 1025 34.0
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.0e-84 319.3 987 34.5
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 2.9e-84 317.8 776 38.5
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 2.9e-84 317.8 1035 33.8
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 3.8e-84 317.4 1001 32.5
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 3.2e-83 314.3 1004 34.6
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 4.2e-83 313.9 983 33.7
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 7.9e-82 309.7 1010 33.3
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 1.0e-81 309.3 1044 33.8
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.3e-81 308.9 992 33.3
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.1e-81 307.0 1019 33.0
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 1.1e-78 299.3 1022 33.9
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 6.9e-78 296.6 744 37.1
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.0e-76 292.7 1021 32.4
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 4.2e-75 287.3 1006 31.7
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.3e-73 281.6 1003 32.8
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 6.7e-73 280.0 1069 31.5
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 4.3e-72 277.3 849 36.7
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 5.7e-72 276.9 785 35.0
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 1.3e-71 275.8 969 32.9
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.4e-70 271.6 1115 30.5
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 4.1e-70 270.8 1033 31.5
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 9.1e-70 269.6 745 36.1
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 2.6e-69 268.1 1024 33.1
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.0e-68 266.2 796 34.9
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 1.3e-68 265.8 938 31.1
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 2.2e-68 265.0 761 34.3
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 3.8e-68 264.2 1022 32.7
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 5.0e-68 263.8 984 32.2
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.9e-67 261.9 890 32.9
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 4.2e-67 260.8 958 31.9
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 2.1e-66 258.5 1037 30.8
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 2.7e-66 258.1 995 30.8
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 2.7e-66 258.1 775 36.3
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 1.0e-65 256.1 995 30.7
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.9e-65 254.2 1051 32.2
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 2.6e-64 251.5 891 32.2
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 5.7e-64 250.4 1010 32.4
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 5.7e-64 250.4 985 31.2
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 7.4e-64 250.0 1035 31.7
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.1e-62 244.6 965 32.2
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 5.5e-59 233.8 798 32.0
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 7.2e-59 233.4 1138 29.4
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 4.4e-56 224.2 1009 31.1
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 6.3e-55 220.3 711 34.3
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 2.7e-50 204.9 1117 29.3
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.0e-49 201.4 995 29.9
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 2.0e-48 198.7 975 30.9
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.4e-48 197.6 983 30.1
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.4e-41 176.0 982 29.7
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 4.4e-40 171.0 999 28.6
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 1.0e-36 159.8 989 29.0
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.8e-36 157.9 433 32.3
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.1e-34 152.1 424 31.8
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 4.9e-31 141.0 134 59.7
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.2e-26 126.3 134 56.0
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 8.3e-23 113.6 501 30.3
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 1.9e-19 102.4 194 41.2
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 3.1e-17 95.1 136 47.1
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.2e-16 93.2 104 56.7
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.4e-16 91.7 168 39.9
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 6.4e-15 87.4 136 41.2
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 6.4e-15 87.4 133 45.9
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.6e-13 82.8 102 48.0
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.5e-13 81.6 157 39.5
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 3.0e-12 78.6 59 72.9
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.5e-11 75.5 1091 23.3
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.3e-11 75.1 296 34.1
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 2.8e-10 72.0 452 30.1
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 8.1e-10 70.5 156 31.4
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.1e-09 70.1 59 67.8
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.4e-06 59.7 1040 23.9
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 7.1e-06 57.4 66 50.0


User provided reference genes

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