Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 5.7e-167 590.9 310 100.0
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 7.6e-111 404.4 323 74.0
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 9.3e-109 397.5 320 74.1
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.6e-108 396.7 317 73.8
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 4.6e-108 395.2 321 72.3
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 3.9e-107 392.1 321 72.9
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 1.5e-106 390.2 327 70.6
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.5e-106 389.4 327 70.9
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 2.8e-105 386.0 308 74.7
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 7.6e-103 377.9 307 72.6
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 7.6e-103 377.9 307 72.6
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 1.3e-102 377.1 296 75.7
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.6e-100 370.2 321 68.8
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 7.4e-82 308.1 290 60.0
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 4.7e-76 288.9 297 58.2
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 1.0e-75 287.7 293 58.7
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.8e-75 287.0 307 56.7
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 2.3e-75 286.6 293 58.4
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 3.0e-75 286.2 293 59.0
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 8.8e-75 284.6 293 58.7
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 1.7e-73 280.4 293 57.3
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 4.8e-73 278.9 293 57.3
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.8e-72 276.9 307 54.7
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 1.2e-71 274.2 289 56.1
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.6e-68 263.8 280 57.1
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 1.0e-59 234.6 280 50.7
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 3.0e-59 233.0 297 49.8
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 3.0e-59 233.0 277 50.5
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 7.3e-53 211.8 201 63.2
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 7.8e-47 191.8 195 59.0
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 1.5e-45 187.6 127 79.5
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.9e-45 187.2 187 59.9
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 1.1e-43 181.4 155 66.5
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 1.1e-43 181.4 155 66.5
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.3e-41 174.5 231 42.0
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 6.4e-41 172.2 324 38.6
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-39 167.9 180 56.7
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 6.0e-39 165.6 209 45.5
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 7.8e-39 165.2 243 39.9
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 8.6e-38 161.8 177 54.2
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 8.6e-38 161.8 177 54.2
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-36 157.9 169 53.8
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 4.7e-36 156.0 241 40.7
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 8.1e-36 155.2 248 41.9
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 1.4e-35 154.5 330 36.7
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 2.3e-35 153.7 243 40.7
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 4.0e-35 152.9 314 36.6
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 5.2e-35 152.5 301 35.9
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 1.5e-34 151.0 235 40.9
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 4.4e-34 149.4 298 35.6
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 5.8e-34 149.1 292 36.6
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 3.7e-33 146.4 317 35.6
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 3.7e-33 146.4 346 32.7
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 4.9e-33 146.0 315 37.1
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 6.4e-33 145.6 288 35.8
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 2.4e-32 143.7 293 36.2
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 4.1e-32 142.9 277 37.2
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 4.1e-32 142.9 232 39.2
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 4.1e-32 142.9 252 39.3
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 7.1e-32 142.1 309 35.0
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 7.1e-32 142.1 300 36.0
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.6e-31 141.0 236 37.7
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.6e-31 141.0 331 34.7
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 2.1e-31 140.6 276 35.1
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 2.7e-31 140.2 252 37.7
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 3.5e-31 139.8 333 33.6
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 3.5e-31 139.8 252 38.5
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 3.5e-31 139.8 249 39.4
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 6.0e-31 139.0 217 41.0
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 7.8e-31 138.7 249 38.2
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 1.0e-30 138.3 255 37.6
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.0e-30 138.3 305 33.8
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 1.7e-30 137.5 295 34.2
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 3.9e-30 136.3 248 37.1
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 5.1e-30 136.0 237 38.4
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 5.1e-30 136.0 239 37.2
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 5.1e-30 136.0 229 39.7
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 5.1e-30 136.0 234 36.8
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 6.6e-30 135.6 314 35.4
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 8.6e-30 135.2 246 36.6
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.5e-29 134.4 303 35.0
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 1.5e-29 134.4 277 34.3
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 1.9e-29 134.0 230 37.4
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.9e-29 134.0 275 33.8
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 3.3e-29 133.3 258 36.4
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.3e-29 133.3 236 36.9
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 4.3e-29 132.9 313 34.2
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 5.6e-29 132.5 143 53.1
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 5.6e-29 132.5 356 30.9
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 5.6e-29 132.5 324 33.3
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 7.3e-29 132.1 254 35.4
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 7.3e-29 132.1 277 33.9
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 9.5e-29 131.7 273 36.3
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 9.5e-29 131.7 293 32.8
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 1.6e-28 131.0 142 52.8
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 1.6e-28 131.0 246 36.2
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.6e-28 131.0 242 39.3
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 2.1e-28 130.6 143 52.4
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 2.8e-28 130.2 314 33.1
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 2.8e-28 130.2 293 33.1
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 2.8e-28 130.2 323 31.3
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 6.2e-28 129.0 359 30.6
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 8.1e-28 128.6 356 32.0
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 1.1e-27 128.3 227 37.9
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 1.1e-27 128.3 260 35.4
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 1.4e-27 127.9 320 31.9
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 1.4e-27 127.9 275 34.9
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 1.8e-27 127.5 269 34.2
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 1.8e-27 127.5 250 37.2
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.4e-27 127.1 365 30.1
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 4.0e-27 126.3 240 37.1
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 4.0e-27 126.3 365 30.1
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.0e-27 126.3 364 29.9
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 4.0e-27 126.3 301 33.2
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 1.2e-26 124.8 212 39.6
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 7.6e-26 122.1 269 34.2
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 1.3e-25 121.3 280 31.1
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 1.7e-25 120.9 203 41.9
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 2.2e-25 120.6 231 35.1
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 2.9e-25 120.2 218 36.7
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 6.4e-25 119.0 228 36.4
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 6.4e-25 119.0 260 35.8
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 6.4e-25 119.0 240 36.2
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 6.4e-25 119.0 280 32.5
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.1e-24 118.2 296 31.4
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 5.4e-24 115.9 319 31.3
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 9.2e-24 115.2 235 36.2
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.6e-23 114.4 280 32.5
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 2.1e-23 114.0 233 35.6
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 2.1e-23 114.0 330 31.5
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 2.7e-23 113.6 267 32.2
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.7e-22 110.9 220 37.7
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 1.9e-21 107.5 189 39.7
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.1e-20 104.0 213 36.2
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 6.2e-20 102.4 240 33.3
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 8.1e-20 102.1 182 35.2
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 1.2e-18 98.2 229 31.9
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 6.0e-15 85.9 188 34.6
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 5.1e-14 82.8 229 30.6
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 1.5e-13 81.3 224 31.2
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 1.9e-13 80.9 285 30.5
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 1.9e-13 80.9 107 43.9
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 5.6e-13 79.3 267 30.0
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 1.2e-10 71.6 203 32.5
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 7.6e-10 68.9 182 30.8
BcaB04g17431 Brassica carinata HOM05D004919 ORTHO05D005994 2.7e-07 60.5 75 46.7
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.3e-06 57.4 268 28.7


User provided reference genes

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