Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 7.8e-42 173.3 85 100.0
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 5.8e-37 157.1 84 92.9
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 4.9e-36 154.1 85 90.6
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-35 151.0 85 89.4
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-35 151.0 84 90.5
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 4.2e-35 151.0 84 90.5
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 7.1e-35 150.2 85 88.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 7.1e-35 150.2 84 89.3
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 9.3e-35 149.8 83 89.2
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 9.3e-35 149.8 85 88.2
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 9.3e-35 149.8 85 88.2
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 9.3e-35 149.8 85 88.2
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 9.3e-35 149.8 85 88.2
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 9.3e-35 149.8 85 88.2
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-34 149.4 84 89.3
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.2e-34 149.4 84 89.3
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.7e-34 148.3 85 88.2
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 7.9e-34 146.7 84 86.9
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 3.9e-33 144.4 85 85.9
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 9.6e-32 139.8 85 83.5
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 4.8e-31 137.5 85 83.5
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 4.8e-31 137.5 85 83.5
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.1e-30 136.3 85 84.7
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.4e-30 135.2 85 81.2
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 6.9e-30 133.7 85 80.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 6.9e-30 133.7 85 80.0
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 6.9e-30 133.7 85 80.0
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 6.9e-30 133.7 85 80.0
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.4e-29 131.3 85 78.8
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 3.4e-29 131.3 85 78.8
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 4.5e-29 131.0 83 79.5
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 4.5e-29 131.0 85 78.8
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 5.8e-29 130.6 85 78.8
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 5.8e-29 130.6 85 78.8
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 5.8e-29 130.6 85 78.8
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-28 129.4 85 77.6
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 1.3e-28 129.4 85 77.6
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-28 129.0 85 78.8
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-28 129.0 83 77.1
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-28 129.0 83 77.1
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.7e-28 129.0 83 77.1
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.9e-28 128.3 85 77.6
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 3.8e-28 127.9 85 77.6
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.1e-27 126.3 85 77.6
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.5e-24 115.9 85 71.8
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 5.8e-21 104.0 81 66.7
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 6.7e-17 90.5 79 63.3
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.7e-16 87.4 85 57.6
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 7.4e-16 87.0 85 55.3
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 7.4e-16 87.0 85 57.6
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 9.7e-16 86.7 85 58.8
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.6e-15 85.9 78 55.1
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.6e-15 85.9 78 55.1
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 2.2e-15 85.5 78 55.1
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.2e-15 85.5 79 58.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.2e-15 85.5 78 55.1
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.8e-15 85.1 85 61.2
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 2.8e-15 85.1 79 57.0
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 8.2e-15 83.6 79 57.0
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 8.2e-15 83.6 79 57.0
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-14 83.2 85 55.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.1e-14 83.2 80 57.5
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 1.1e-14 83.2 79 57.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.1e-14 83.2 78 57.7
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-14 82.4 85 57.6
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 2.4e-14 82.0 85 54.1
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.4e-14 82.0 80 57.5
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.4e-14 82.0 80 55.0
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 2.4e-14 82.0 85 54.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 3.1e-14 81.6 76 57.9
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.1e-14 81.6 78 56.4
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 3.1e-14 81.6 87 55.2
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 4.1e-14 81.3 78 56.4
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.1e-14 81.3 79 54.4
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 4.1e-14 81.3 79 55.7
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 4.1e-14 81.3 79 55.7
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 5.3e-14 80.9 79 55.7
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 6.9e-14 80.5 79 55.7
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.0e-14 80.1 86 52.3
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.2e-13 79.7 84 51.2
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.2e-13 79.7 78 55.1
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.5e-13 79.3 78 55.1
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.5e-13 79.3 84 51.2
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 2.0e-13 79.0 79 55.7
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.0e-13 79.0 79 57.0
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.6e-13 78.6 86 54.7
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 2.6e-13 78.6 82 52.4
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.6e-13 78.6 86 53.5
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 2.6e-13 78.6 79 55.7
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 3.4e-13 78.2 81 50.6
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 3.4e-13 78.2 79 55.7
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.4e-13 78.2 79 55.7
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.4e-13 78.2 79 55.7
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 4.5e-13 77.8 80 52.5
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.5e-13 77.8 79 55.7
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 5.9e-13 77.4 79 54.4
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 5.9e-13 77.4 79 55.7
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 5.9e-13 77.4 81 56.8
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 5.9e-13 77.4 79 54.4
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 7.7e-13 77.0 86 50.0
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 7.7e-13 77.0 79 53.2
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-12 76.6 84 56.0
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-12 76.6 84 56.0
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.3e-12 76.3 78 52.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.7e-12 75.9 79 54.4
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 2.9e-12 75.1 85 50.6
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 2.9e-12 75.1 82 52.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.9e-12 75.1 76 48.7
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 3.8e-12 74.7 82 51.2
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 3.8e-12 74.7 79 54.4
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 6.5e-12 73.9 76 51.3
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 8.5e-12 73.6 79 53.2
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.1e-11 73.2 76 51.3
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.4e-11 72.8 76 51.3
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.5e-11 72.0 80 47.5
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.2e-11 71.6 79 46.8
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 4.2e-11 71.2 85 50.6
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 7.2e-11 70.5 79 53.2
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 7.2e-11 70.5 79 51.9
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.6e-10 69.3 80 51.2
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.6e-10 69.3 78 51.3
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 2.7e-10 68.6 81 49.4
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 4.6e-10 67.8 84 51.2
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 4.6e-10 67.8 79 50.6
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 6.1e-10 67.4 85 49.4
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 6.1e-10 67.4 78 48.7
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.0e-09 66.6 79 44.3
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.4e-09 66.2 76 47.4
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.8e-09 65.9 80 43.8
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-09 65.9 82 43.9
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.8e-09 65.9 77 46.8
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 3.9e-09 64.7 77 41.6
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 5.1e-09 64.3 75 46.7
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 5.1e-09 64.3 87 42.5
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 5.1e-09 64.3 80 46.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 8.8e-09 63.5 76 44.7
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.1e-08 63.2 78 44.9
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-08 63.2 82 45.1
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.9e-08 62.4 76 46.1
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 5.7e-08 60.8 74 50.0
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 5.7e-08 60.8 78 42.3
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.8e-07 58.5 66 50.0
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.8e-07 58.5 78 42.3
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 3.7e-07 58.2 78 42.3
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.8e-07 57.8 81 44.4
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.2e-07 57.0 81 44.4


User provided reference genes

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