Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.2e-126 455.7 236 100.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.8e-113 411.4 236 88.6
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 6.2e-113 411.0 236 87.7
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 6.2e-113 411.0 236 87.7
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 8.1e-113 410.6 236 88.1
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-112 409.8 236 87.7
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.4e-112 409.8 236 86.9
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 4.0e-112 408.3 236 86.9
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.0e-112 408.3 236 87.3
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 5.3e-112 407.9 236 87.7
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.3e-110 403.3 236 88.1
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.1e-109 400.2 236 85.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.4e-109 399.1 236 86.4
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.6e-105 385.2 224 87.5
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.2e-103 380.2 233 81.1
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 4.6e-100 368.2 233 77.3
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 6.0e-100 367.9 233 77.7
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.8e-99 366.3 233 77.7
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 3.0e-99 365.5 235 77.0
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.9e-99 365.2 233 78.1
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.5e-98 362.5 236 75.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.5e-98 362.5 236 75.8
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 4.3e-98 361.7 236 75.0
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 7.4e-98 360.9 233 75.5
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 75.4
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 74.6
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 9.6e-98 360.5 236 74.2
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.6e-97 359.8 236 76.3
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.1e-97 359.4 236 74.6
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.8e-97 359.0 236 75.0
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.8e-97 359.0 236 75.8
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 3.7e-97 358.6 236 74.2
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.2e-97 357.8 233 75.1
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 8.1e-97 357.5 236 73.7
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 8.1e-97 357.5 236 73.3
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.1e-96 357.1 236 74.2
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.4e-96 356.7 237 75.1
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.8e-96 356.3 238 75.6
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.8e-96 356.3 236 75.4
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 2.4e-96 355.9 236 75.8
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 9.0e-96 354.0 236 74.2
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 5.8e-95 351.3 233 76.0
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 5.8e-95 351.3 233 75.1
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 7.6e-95 350.9 236 73.3
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.0e-94 350.5 236 74.6
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.3e-94 350.1 225 76.0
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.3e-94 350.1 236 72.9
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.3e-94 350.1 236 72.5
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.3e-94 350.1 236 72.5
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.9e-94 349.0 223 77.1
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 3.8e-94 348.6 236 73.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.4e-93 346.7 236 71.2
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.4e-93 346.7 233 73.4
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 3.2e-93 345.5 237 73.4
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 4.2e-93 345.1 234 72.2
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 4.2e-93 345.1 236 72.9
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 4.2e-93 345.1 236 71.2
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 5.5e-93 344.7 236 71.6
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 5.5e-93 344.7 236 72.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 2.7e-92 342.4 235 71.5
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 3.5e-92 342.0 260 67.3
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.0e-91 340.5 232 72.0
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.3e-91 339.3 233 71.7
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 8.7e-91 337.4 238 72.3
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 9.6e-90 334.0 236 71.6
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 9.6e-90 334.0 238 71.4
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.8e-89 332.4 272 64.3
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.8e-89 332.4 238 70.6
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 6.2e-89 331.3 236 68.6
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 8.2e-89 330.9 279 62.4
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.4e-88 330.1 201 79.1
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.4e-88 330.1 236 70.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 5.8e-87 324.7 303 58.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.8e-87 324.7 236 64.8
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 6.5e-86 321.2 236 68.6
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 6.5e-86 321.2 210 78.6
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 8.4e-86 320.9 228 68.9
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 8.4e-86 320.9 238 69.3
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.9e-85 319.7 223 70.4
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.9e-85 319.7 223 70.4
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 3.2e-85 318.9 223 71.3
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 3.2e-85 318.9 223 70.9
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 4.2e-85 318.5 223 70.0
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.5e-84 315.5 236 69.1
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 3.5e-84 315.5 201 77.1
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 4.6e-84 315.1 233 70.8
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.0e-83 312.4 236 64.4
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 5.1e-83 311.6 219 70.8
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.1e-82 310.5 206 74.3
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.1e-82 310.5 230 67.8
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.9e-82 309.7 236 64.4
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 4.3e-82 308.5 234 69.2
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 4.3e-82 308.5 234 69.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 4.8e-81 305.1 239 66.1
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.3e-81 304.7 205 74.6
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.8e-80 303.1 187 77.0
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 2.4e-80 302.8 201 74.1
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.4e-79 298.9 229 66.8
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 4.5e-79 298.5 262 59.9
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 7.7e-79 297.7 220 67.7
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.3e-78 297.0 208 70.2
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.2e-78 296.2 201 71.6
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 9.4e-77 290.8 236 60.2
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 3.6e-76 288.9 196 70.9
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.0e-75 287.3 225 64.9
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.3e-75 286.2 190 76.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.9e-75 285.4 218 66.1
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 6.7e-75 284.6 236 61.4
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 9.7e-74 280.8 239 56.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 2.2e-73 279.6 166 79.5
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.4e-72 276.2 202 70.3
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 6.5e-70 268.1 225 56.0
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 2.5e-69 266.2 167 76.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.2e-69 265.8 188 68.1
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 7.9e-68 261.2 166 79.5
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 2.8e-65 252.7 219 56.2
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.8e-65 251.9 237 59.9
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.2e-65 251.1 235 49.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.5e-63 245.4 230 57.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 2.5e-61 239.6 220 54.5
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 3.6e-60 235.7 147 78.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.4e-59 233.8 225 54.7
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 4.8e-57 225.3 151 72.2
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.4e-56 223.8 201 60.2
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 7.0e-56 221.5 135 82.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.5e-55 219.2 135 81.5
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.8e-51 206.8 238 56.3
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.7e-49 200.3 173 56.6
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.1e-48 197.6 126 77.8
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.0e-43 179.1 236 46.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 2.0e-39 166.8 236 42.8
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 7.7e-39 164.9 106 74.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.3e-38 164.1 104 78.8
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.8e-38 162.5 106 74.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.9e-37 160.2 102 74.5
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 6.1e-36 155.2 112 68.8
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.7e-33 146.0 230 37.4
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.7e-31 139.8 262 37.4
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 4.6e-31 139.0 142 50.7
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 6.6e-30 135.2 83 77.1
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.9e-27 124.8 214 35.0
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 6.6e-22 108.6 106 57.5
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.5e-21 106.7 213 34.7
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.5e-21 106.7 213 34.7
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.5e-18 97.4 74 62.2
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 9.8e-18 94.7 68 70.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 7.8e-15 85.1 89 49.4
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.7e-14 84.0 51 76.5
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.3e-14 83.6 49 81.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 6.6e-14 82.0 211 31.8
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.5e-13 80.1 49 75.5
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 8.1e-12 75.1 52 65.4
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 8.9e-11 71.6 53 64.2
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 4.9e-09 65.9 50 56.0
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 6.4e-09 65.5 56 55.4
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 1.4e-08 64.3 46 69.6


User provided reference genes

Program Settings