Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 4.2e-153 544.7 273 100.0
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.0e-122 443.7 286 79.4
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.2e-120 436.8 293 78.8
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 3.9e-119 431.8 293 77.8
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 6.9e-116 421.0 295 75.6
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 7.7e-115 417.5 278 77.3
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-114 415.6 282 77.3
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.9e-114 415.6 282 77.3
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 8.5e-114 414.1 282 77.0
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-113 413.3 284 76.4
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.4e-113 413.3 284 76.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.9e-113 412.9 280 76.8
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.9e-113 412.9 269 78.8
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 5.5e-113 411.4 294 73.8
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 7.2e-113 411.0 280 76.4
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 7.2e-113 411.0 280 76.4
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-112 409.5 280 76.1
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 5.1e-111 404.8 277 75.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 7.4e-110 401.0 283 73.1
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.3e-109 400.2 294 72.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.7e-109 399.8 293 70.6
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 6.3e-109 397.9 261 77.4
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.0e-102 376.3 273 72.9
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-102 376.3 273 72.9
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 4.4e-102 375.2 277 72.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 3.7e-101 372.1 256 73.4
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 4.8e-101 371.7 259 71.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.8e-101 371.7 260 72.7
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 6.3e-101 371.3 265 72.1
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.1e-100 370.5 262 72.5
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.1e-100 369.0 246 73.6
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.1e-100 369.0 276 71.4
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 4.1e-100 368.6 277 71.5
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 4.1e-100 368.6 255 72.2
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 5.3e-100 368.2 252 72.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 7.0e-100 367.9 267 70.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 9.1e-100 367.5 252 71.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-99 366.3 277 71.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.0e-99 366.3 225 78.7
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.0e-99 366.3 258 71.3
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.5e-99 365.5 216 80.6
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 7.7e-99 364.4 225 78.7
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 7.7e-99 364.4 214 81.3
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-98 363.2 223 79.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 3.8e-98 362.1 218 80.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 5.0e-98 361.7 232 75.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 8.5e-98 360.9 232 75.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-97 360.5 218 79.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.9e-97 359.8 270 69.6
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.9e-97 359.8 231 77.9
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.9e-97 359.8 248 73.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.2e-97 357.8 231 78.8
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.4e-97 357.5 231 77.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 9.4e-97 357.5 216 79.2
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.2e-96 357.1 244 71.7
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.7e-96 355.9 215 78.6
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 3.6e-96 355.5 215 79.5
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.3e-95 352.8 249 71.1
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 4.0e-95 352.1 270 68.1
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 5.2e-95 351.7 216 78.7
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 6.7e-95 351.3 264 69.3
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.5e-94 350.1 257 70.4
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.0e-94 349.7 268 67.9
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.0e-94 349.7 229 76.0
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.3e-94 349.0 259 69.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.3e-94 349.0 259 69.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.3e-94 349.0 245 72.2
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 7.5e-94 347.8 264 67.8
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.3e-93 347.1 222 76.6
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.3e-93 347.1 252 69.4
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.7e-93 346.7 257 68.5
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.2e-93 346.3 232 75.4
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 2.8e-93 345.9 258 68.2
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 4.8e-93 345.1 263 66.9
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 4.8e-93 345.1 253 69.2
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 8.3e-93 344.4 264 67.0
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.1e-92 344.0 258 68.6
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.1e-92 344.0 273 65.2
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.4e-92 342.8 243 70.8
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 4.1e-92 342.0 237 71.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 4.1e-92 342.0 218 76.6
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 5.3e-92 341.7 267 68.9
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.6e-91 340.1 253 71.5
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.6e-91 340.1 270 65.2
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.7e-91 339.3 215 76.3
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 4.5e-91 338.6 255 67.8
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.5e-91 338.6 252 69.0
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.9e-91 338.2 264 65.2
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.0e-90 337.4 264 65.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.3e-90 337.0 273 64.1
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.8e-90 335.5 221 73.3
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 6.5e-90 334.7 264 66.3
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 6.5e-90 334.7 245 68.2
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.9e-89 333.2 245 68.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 5.5e-89 331.6 261 62.8
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 7.2e-89 331.3 222 70.7
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 2.1e-88 329.7 236 69.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.7e-88 329.3 250 67.6
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.6e-88 328.9 260 66.2
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.7e-88 328.6 260 65.0
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.4e-87 327.0 263 63.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.0e-87 325.9 255 65.5
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 4.0e-87 325.5 233 67.8
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 4.0e-87 325.5 233 67.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.0e-87 325.5 234 71.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 4.0e-87 325.5 255 65.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 5.2e-87 325.1 233 67.8
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.2e-86 323.9 262 64.5
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-86 323.6 233 67.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-86 323.6 233 67.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.5e-86 323.6 233 67.4
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.5e-86 323.6 218 73.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 4.4e-86 322.0 249 66.3
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 7.5e-86 321.2 250 66.8
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 2.8e-85 319.3 259 66.0
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.7e-85 318.9 211 73.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.8e-85 318.5 262 64.5
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.1e-84 317.4 242 66.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.4e-84 317.0 213 72.8
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.4e-84 316.2 253 64.0
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 3.1e-84 315.8 234 66.7
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 4.1e-84 315.5 259 62.9
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 7.0e-84 314.7 247 64.0
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.1e-84 314.3 263 62.7
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.0e-83 313.2 243 65.8
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 4.5e-83 312.0 263 62.7
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.0e-82 310.8 217 69.6
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.0e-82 310.8 216 69.9
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.7e-82 310.1 210 71.9
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 3.3e-81 305.8 226 68.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.2e-80 303.9 253 62.8
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.8e-80 302.8 252 61.5
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 4.7e-80 302.0 252 61.9
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 8.9e-79 297.7 175 81.7
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.0e-78 296.6 234 63.7
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.0e-78 296.6 199 73.4
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.6e-75 287.0 207 67.6
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.5e-75 285.4 217 66.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 7.8e-75 284.6 231 63.6
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 7.8e-75 284.6 177 79.1
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.9e-73 280.0 171 80.1
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.4e-70 268.9 234 59.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 7.3e-65 251.5 195 63.1
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.2e-64 250.8 259 55.2
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 3.6e-64 249.2 206 60.2
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.8e-62 241.9 287 50.2
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.9e-61 239.6 224 58.9
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 4.6e-59 232.3 224 53.6
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 6.0e-59 231.9 219 58.0
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.0e-58 231.1 137 81.0
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 3.0e-58 229.6 137 80.3
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 2.3e-55 219.9 135 77.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.5e-49 200.7 224 47.3
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.9e-49 200.3 239 46.0
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.6e-40 170.6 178 50.6
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.2e-40 168.7 161 52.2
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.4e-39 167.5 184 51.6
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.2e-28 129.8 89 76.4
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.6e-24 117.5 115 53.9
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.9e-19 98.6 75 61.3
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 8.4e-13 78.6 89 44.9
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.3e-10 70.5 65 56.9
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 5.1e-10 69.3 68 48.5
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 6.7e-10 68.9 75 52.0
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.5e-09 67.8 76 55.3
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 5.7e-09 65.9 44 70.5
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.3e-07 59.3 40 70.0


User provided reference genes

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