Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.2e-52 209.5 104 100.0
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 5.6e-34 147.5 105 69.5
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 9.6e-34 146.7 105 68.6
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 9.6e-34 146.7 105 69.5
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 2.1e-33 145.6 105 68.6
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-32 143.3 105 69.5
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 1.1e-32 143.3 105 69.5
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 1.1e-32 143.3 105 69.5
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 2.4e-32 142.1 105 69.5
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 2.4e-32 142.1 105 69.5
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 6.9e-32 140.6 106 67.0
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 6.9e-32 140.6 103 68.9
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 2.6e-31 138.7 104 67.3
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.3e-30 136.3 108 63.9
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.5e-29 132.1 114 61.4
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 4.2e-29 131.3 107 61.7
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.8e-27 125.9 104 62.5
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 5.1e-27 124.4 105 63.8
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 5.1e-27 124.4 105 63.8
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 6.7e-27 124.0 105 63.8
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 1.9e-26 122.5 99 59.6
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 4.3e-26 121.3 104 62.5
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 1.1e-24 116.7 103 59.2
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 1.1e-24 116.7 103 59.2
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 1.4e-24 116.3 108 58.3
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 1.4e-24 116.3 101 58.4
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 1.4e-24 116.3 101 58.4
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 1.4e-24 116.3 101 58.4
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 2.5e-21 105.5 107 51.4
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-20 102.4 105 54.3
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 7.9e-20 100.5 86 60.5
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 7.9e-20 100.5 103 51.5
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.3e-19 99.8 74 64.9
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 2.3e-19 99.0 106 49.1
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.0e-19 98.6 107 48.6
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 3.9e-19 98.2 83 60.2
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.9e-19 98.2 106 49.1
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 5.1e-19 97.8 90 57.8
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 8.7e-19 97.1 91 54.9
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 1.1e-18 96.7 97 55.7
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 1.1e-18 96.7 106 50.0
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 1.1e-18 96.7 117 48.7
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 2.5e-18 95.5 66 66.7
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 3.3e-18 95.1 74 64.9
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 3.3e-18 95.1 72 65.3
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 4.3e-18 94.7 96 53.1
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 5.7e-18 94.4 110 44.5
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 5.7e-18 94.4 100 52.0
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 5.7e-18 94.4 106 47.2
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 7.4e-18 94.0 93 53.8
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 9.7e-18 93.6 74 59.5
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 1.3e-17 93.2 69 59.4
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 1.6e-17 92.8 92 57.6
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 2.8e-17 92.0 99 51.5
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 4.8e-17 91.3 74 60.8
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 1.1e-16 90.1 72 61.1
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.1e-16 90.1 72 61.1
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.1e-16 90.1 72 61.1
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.1e-16 90.1 72 61.1
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 1.4e-16 89.7 94 47.9
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.4e-16 89.0 72 59.7
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.2e-15 86.7 108 45.4
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.4e-15 85.1 93 48.4
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 3.4e-15 85.1 93 48.4
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 7.7e-15 84.0 74 56.8
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 7.7e-15 84.0 70 60.0
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 2.2e-14 82.4 90 50.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 6.7e-11 70.9 92 48.9
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 1.1e-10 70.1 114 41.2
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 2.0e-10 69.3 50 62.0
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 4.3e-10 68.2 92 47.8
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 9.7e-10 67.0 92 45.7
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 1.3e-09 66.6 73 52.1
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 6.3e-09 64.3 82 43.9
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.8e-08 62.8 91 39.6
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 2.4e-08 62.4 96 45.8
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 3.1e-08 62.0 91 38.5
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 6.9e-08 60.8 48 56.2
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 9.1e-08 60.5 57 52.6
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 9.1e-08 60.5 39 74.4
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 1.2e-07 60.1 68 50.0
PGR031G0494 Punica granatum HOM05D007708 ORTHO05D009506 1.2e-07 60.1 64 53.1
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 1.5e-07 59.7 96 41.7
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 2.0e-07 59.3 51 56.9
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 3.4e-07 58.5 73 47.9
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 7.7e-07 57.4 111 36.9
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 1.0e-06 57.0 49 53.1
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 1.3e-06 56.6 44 61.4
Oeu052012.1 Olea europaea HOM05D037150 ORTHO05D009506 2.2e-06 55.8 50 46.0
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 5.0e-06 54.7 46 56.5


User provided reference genes

Program Settings