Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 0.0e+00 1192.9 600 100.0
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.5e-259 899.4 603 75.6
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 6.1e-258 894.0 599 74.3
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.3e-257 892.1 599 74.1
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.3e-257 892.1 599 74.1
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 4.0e-257 891.3 605 75.4
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 3.2e-254 881.7 601 73.5
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 1.2e-253 879.8 604 74.3
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 1.0e-252 876.7 602 73.6
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 1.3e-252 876.3 604 72.8
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 2.9e-223 778.9 604 66.1
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 3.7e-194 682.2 478 74.1
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 1.3e-191 673.7 478 73.4
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.0e-172 610.9 608 54.9
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 9.7e-171 604.4 608 53.5
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 7.2e-166 588.2 608 52.6
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.2e-163 580.9 611 52.0
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 3.7e-162 575.9 611 51.6
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.8e-162 575.5 611 52.2
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 5.3e-161 572.0 607 50.7
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 9.4e-158 561.2 611 51.7
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 3.7e-154 549.3 611 49.8
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.4e-153 547.4 627 48.6
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 5.4e-153 545.4 608 48.4
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 9.5e-150 534.6 606 50.7
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 1.2e-149 534.3 607 48.1
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 4.0e-148 529.3 610 49.3
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 1.3e-146 524.2 610 48.7
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 6.3e-146 521.9 617 47.5
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 1.4e-145 520.8 610 48.0
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.8e-145 520.4 653 46.7
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 1.2e-144 517.7 610 48.0
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 2.0e-144 516.9 582 50.9
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.8e-141 506.5 625 46.9
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 3.6e-141 506.1 612 47.2
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 8.0e-141 505.0 609 48.1
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 5.2e-140 502.3 606 47.7
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 3.4e-139 499.6 614 47.2
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 9.8e-139 498.0 612 46.7
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 6.4e-138 495.4 614 47.1
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 7.0e-137 491.9 523 52.0
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 9.2e-137 491.5 616 46.6
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.7e-135 487.3 572 46.9
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 9.5e-134 481.5 607 45.8
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 9.5e-134 481.5 623 45.3
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 2.1e-133 480.3 607 45.6
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 2.8e-133 479.9 609 47.0
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 6.2e-133 478.8 621 44.4
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 5.2e-132 475.7 610 45.6
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 8.9e-132 474.9 611 45.0
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 8.9e-132 474.9 624 46.3
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.6e-131 473.4 627 45.8
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 1.7e-130 470.7 689 43.3
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 4.1e-129 466.1 629 45.0
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 1.6e-128 464.2 628 43.9
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 4.6e-128 462.6 625 45.4
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 6.0e-128 462.2 630 44.6
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 1.0e-127 461.5 625 45.3
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 5.1e-127 459.1 622 43.4
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 3.3e-126 456.4 636 43.4
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 4.3e-126 456.1 639 42.7
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 7.3e-126 455.3 628 43.9
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 3.6e-125 453.0 623 43.2
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 4.7e-125 452.6 623 43.2
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 4.0e-124 449.5 632 42.2
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 9.9e-123 444.9 626 42.5
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 2.2e-122 443.7 483 53.4
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 2.9e-122 443.4 610 42.3
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 6.0e-120 435.6 640 42.8
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 7.8e-120 435.3 644 42.1
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 1.2e-117 427.9 629 41.0
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 4.7e-117 426.0 715 37.9
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 7.6e-115 418.7 622 41.8
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 4.3e-110 402.9 621 40.6
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 6.2e-109 399.1 625 42.2
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 4.2e-105 386.3 271 73.8
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 1.7e-98 364.4 614 39.1
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 3.3e-94 350.1 655 37.9
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.2e-88 331.6 475 41.3
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 6.7e-87 325.9 393 48.9
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 5.3e-84 316.2 393 47.8
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 1.4e-81 308.1 363 47.4
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.8e-76 291.2 407 44.0
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.5e-75 288.1 324 50.3
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.3e-74 285.0 316 50.9
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 4.2e-73 280.0 321 51.1
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 6.1e-72 276.2 279 54.5
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.4e-71 275.0 292 49.0
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 2.4e-60 237.7 279 49.1
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 1.8e-52 211.5 333 39.9
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 7.0e-52 209.5 627 27.1
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 5.0e-50 203.4 226 53.1
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 2.2e-45 188.0 232 44.8
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 4.1e-44 183.7 226 48.7
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 9.1e-44 182.6 608 27.6
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 2.8e-37 161.0 265 39.2
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 4.5e-35 153.7 400 30.8
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 4.7e-32 143.7 101 68.3
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 7.5e-30 136.3 288 29.9
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 1.3e-29 135.6 275 37.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.0e-27 128.3 123 52.0
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 2.7e-27 127.9 359 29.5
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.9e-26 124.0 118 51.7
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 3.3e-25 120.9 183 46.4
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.2e-24 119.0 159 39.0
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 1.0e-23 115.9 195 37.4
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 1.4e-20 105.5 137 48.2
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 2.4e-20 104.8 120 40.8
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 7.0e-20 103.2 112 41.1
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 3.5e-19 100.9 136 44.9
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 4.6e-19 100.5 542 23.8
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 6.0e-19 100.1 136 47.1
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.5e-17 95.5 147 43.5
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 3.6e-16 90.9 122 47.5
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 6.2e-16 90.1 121 44.6
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 3.1e-15 87.8 353 28.0
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 3.2e-12 77.8 124 41.1
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 8.1e-08 63.2 112 41.1
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 3.4e-06 57.8 92 43.5


User provided reference genes

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