Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.3e-182 642.9 317 100.0
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 6.2e-108 394.8 312 68.3
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 9.0e-83 311.2 310 57.7
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.4e-82 309.3 309 56.6
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.3e-62 243.4 164 78.0
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.7e-57 227.3 315 43.2
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 2.1e-55 220.3 314 42.0
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.8e-52 209.1 317 42.9
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 7.7e-50 201.8 311 39.9
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.1e-48 198.0 310 40.6
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 9.4e-48 194.9 323 37.8
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 1.2e-47 194.5 323 37.8
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 7.9e-47 191.8 309 39.8
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.4e-46 191.0 315 40.6
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 2.3e-46 190.3 314 40.1
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.3e-46 190.3 312 39.1
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.3e-45 186.4 311 38.3
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 9.7e-45 184.9 328 35.1
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.8e-44 183.3 310 40.3
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.7e-44 183.0 315 38.4
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 2.4e-43 180.3 313 38.3
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 3.1e-43 179.9 309 39.5
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 4.1e-43 179.5 309 39.2
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 3.5e-42 176.4 324 36.7
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 3.5e-42 176.4 324 36.7
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 5.9e-42 175.6 317 38.2
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-41 174.5 306 35.6
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-41 174.5 324 36.4
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-41 174.5 302 39.4
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-41 174.5 302 39.4
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.3e-41 174.5 316 34.5
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 1.7e-41 174.1 324 35.8
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 5.5e-40 169.1 312 35.9
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 9.4e-40 168.3 330 39.1
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 9.4e-40 168.3 313 38.3
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 1.2e-39 167.9 326 36.8
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 2.7e-39 166.8 302 35.8
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.4e-38 164.5 309 36.2
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 1.8e-38 164.1 325 36.9
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 3.0e-38 163.3 323 36.8
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 4.0e-38 162.9 286 39.5
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 6.7e-38 162.2 323 35.9
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.5e-37 161.0 323 37.5
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 1.5e-37 161.0 324 35.2
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 2.6e-37 160.2 310 36.5
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 7.5e-37 158.7 317 36.3
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 6.3e-36 155.6 305 35.1
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 1.8e-35 154.1 302 36.1
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 2.4e-35 153.7 305 34.8
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.1e-35 153.3 324 35.5
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 5.3e-35 152.5 308 36.7
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 2.7e-34 150.2 318 33.6
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-33 147.9 323 34.7
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 2.2e-33 147.1 266 38.7
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.1e-32 144.8 315 35.2
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 1.5e-32 144.4 317 35.6
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 9.4e-32 141.7 302 36.1
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 2.7e-31 140.2 314 35.4
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 8.8e-30 135.2 258 37.6
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 2.0e-29 134.0 308 34.7
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 3.4e-29 133.3 295 34.6
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.2e-26 124.8 225 37.8
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 5.9e-26 122.5 303 29.0
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 5.0e-25 119.4 318 30.2
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.2e-23 114.8 306 28.4
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 3.6e-23 113.2 309 31.4
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 1.4e-22 111.3 310 30.6
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 1.4e-22 111.3 325 28.9
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 1.8e-22 110.9 208 37.0
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 1.8e-22 110.9 208 37.0
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.7e-20 104.4 269 32.0
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 3.5e-18 96.7 283 29.7
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 5.9e-18 95.9 129 41.1
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 8.6e-17 92.0 217 33.2
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.8e-15 87.0 137 39.4
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.8e-15 87.0 99 44.4
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.8e-15 87.0 296 28.0
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 2.6e-13 80.5 97 45.4
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 7.5e-13 79.0 150 36.7
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.4e-11 73.9 295 26.4
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 3.2e-11 73.6 318 25.8
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 4.1e-11 73.2 195 30.3
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 1.2e-10 71.6 243 27.6
Potri.005G254500 Populus trichocarpa HOM05D000664 ORTHO05D010866 2.7e-10 70.5 312 28.2
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 4.6e-10 69.7 115 40.9
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 5.9e-10 69.3 124 37.9
AUR62014647 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.3e-09 68.2 266 29.3
Potri.005G254633 Populus trichocarpa HOM05D000664 ORTHO05D010866 2.3e-09 67.4 313 28.1
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 3.9e-09 66.6 99 39.4
CAN.G1631.3 Capsicum annuum HOM05D008697 ORTHO05D010866 3.9e-09 66.6 281 26.0
EL10As6g23636 Beta vulgaris HOM05D000007 ORTHO05D000017 5.0e-09 66.2 292 25.7
CAN.G1631.2 Capsicum annuum HOM05D008697 ORTHO05D010866 6.6e-09 65.9 279 26.9
Nitab4.5_0003309g0040 Nicotiana tabacum HOM05D008697 ORTHO05D010866 2.5e-08 63.9 323 25.7
PGSC0003DMG400015217 Solanum tuberosum HOM05D008697 ORTHO05D010866 2.5e-08 63.9 283 26.1
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.3e-08 63.5 65 50.8
PGSC0003DMG400025634 Solanum tuberosum HOM05D008697 ORTHO05D010866 5.6e-08 62.8 242 25.2
Sopen03g029650 Solanum pennellii HOM05D008697 ORTHO05D010866 7.3e-08 62.4 305 24.9
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 9.5e-08 62.0 307 24.1
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 9.5e-08 62.0 103 37.9
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 1.2e-07 61.6 311 25.7
Psat5g230600 Pisum sativum HOM05D000007 ORTHO05D000017 1.2e-07 61.6 319 23.8
Peaxi162Scf00171g00817 Petunia axillaris HOM05D008697 ORTHO05D010866 1.6e-07 61.2 243 25.9
PSO832G0873 Papaver somniferum HOM05D000007 ORTHO05D000676 2.1e-07 60.8 251 27.9
Thecc.08G063600 Theobroma cacao HOM05D007494 ORTHO05D009621 2.1e-07 60.8 108 36.1
Ciclev10028697m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.8e-07 60.5 282 26.2
Nitab4.5_0000430g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 2.8e-07 60.5 319 25.1
arahy.Tifrunner.gnm1.ann1.XHBX5X Arachis hypogaea HOM05D002420 ORTHO05D002422 4.7e-07 59.7 274 26.3
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.7e-07 59.7 98 37.8
Ah.01g013860 Amaranthus hybridus HOM05D000007 ORTHO05D000039 6.2e-07 59.3 248 24.6
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 6.2e-07 59.3 87 40.2
AUR62036918 Chenopodium quinoa HOM05D000007 ORTHO05D000039 6.2e-07 59.3 275 29.5
SalBow7G0422 Salvia bowleyana HOM05D000007 ORTHO05D000017 6.2e-07 59.3 299 24.7
Cpa.g.sc42.22 Carica papaya HOM05D002420 ORTHO05D002422 8.0e-07 58.9 169 27.8
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 8.0e-07 58.9 312 25.6
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 1.4e-06 58.2 313 24.6
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.4e-06 58.2 131 30.5
Lalb_Chr16g0386521 Lupinus albus HOM05D002420 ORTHO05D002422 1.4e-06 58.2 325 25.5
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 1.8e-06 57.8 45 55.6
PGSC0003DMG400004709 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.8e-06 57.8 306 24.2
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 3.1e-06 57.0 100 36.0
Sopen12g034230 Solanum pennellii HOM05D000007 ORTHO05D000017 3.1e-06 57.0 305 24.6
arahy.Tifrunner.gnm1.ann1.6LG1IJ Arachis hypogaea HOM05D002420 ORTHO05D002422 4.0e-06 56.6 287 25.1
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 4.0e-06 56.6 87 33.3
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 4.0e-06 56.6 86 40.7
Ciclev10020526m.g Citrus clementina HOM05D002420 ORTHO05D002422 4.0e-06 56.6 142 33.8
Migut.H00816 Erythranthe guttata HOM05D000007 ORTHO05D000017 4.0e-06 56.6 269 28.6
Nitab4.5_0003040g0190 Nicotiana tabacum HOM05D000001 ORTHO05D010224 4.0e-06 56.6 316 24.4
Solyc12g099550.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 4.0e-06 56.6 307 24.1
BcaC07g40351 Brassica carinata HOM05D001738 ORTHO05D001644 5.2e-06 56.2 285 24.9
CAN.G1909.14 Capsicum annuum HOM05D008697 ORTHO05D010866 5.2e-06 56.2 238 27.7
PGSC0003DMG400015282 Solanum tuberosum HOM05D008697 ORTHO05D010866 5.2e-06 56.2 298 25.5
Aqoxy2G02259 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 6.8e-06 55.8 189 27.0
Aqoxy59s001 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 6.8e-06 55.8 189 27.0
CAN.G637.31 Capsicum annuum HOM05D008697 ORTHO05D010866 6.8e-06 55.8 246 26.8
Peaxi162Scf00246g00812 Petunia axillaris HOM05D000007 ORTHO05D000017 6.8e-06 55.8 283 27.9
Ah.09g231660 Amaranthus hybridus HOM05D002420 ORTHO05D002422 8.9e-06 55.5 234 25.6
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 8.9e-06 55.5 63 44.4
CSS0002420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 8.9e-06 55.5 274 25.2
Dinv38197 Davidia involucrata HOM05D000056 ORTHO05D000019 8.9e-06 55.5 308 25.6


User provided reference genes

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