Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.4e-65 253.1 155 100.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.1e-41 173.7 158 81.0
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 3.2e-41 172.2 157 80.9
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.1e-36 157.1 155 75.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 3.1e-36 155.6 124 73.4
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 3.1e-36 155.6 124 73.4
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 3.8e-34 148.7 155 76.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 7.1e-33 144.4 155 74.8
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 9.3e-33 144.1 125 70.4
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.7e-32 142.5 125 71.2
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.3e-31 139.4 96 76.0
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 3.0e-31 139.0 125 70.4
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 3.0e-31 139.0 125 70.4
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 3.0e-31 139.0 125 70.4
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.9e-30 136.3 96 75.0
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.9e-30 136.3 96 75.0
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.8e-29 132.5 112 71.4
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 2.0e-27 126.3 112 67.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-24 117.1 58 93.1
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 6.0e-24 114.8 72 73.6
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.5e-22 110.2 91 67.0
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 5.7e-22 108.2 115 53.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 7.4e-22 107.8 60 80.0
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 7.4e-22 107.8 121 56.2
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 4.8e-21 105.1 68 70.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.2e-21 104.4 66 80.3
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.4e-20 103.6 129 51.9
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.8e-20 103.2 125 50.4
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.1e-20 102.4 121 51.2
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.2e-19 100.5 53 86.8
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.2e-19 100.5 56 83.9
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.5e-19 100.1 58 82.8
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.0e-19 99.8 52 88.5
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.0e-19 99.8 60 81.7
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.8e-19 98.2 58 81.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.8e-19 98.2 58 81.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.3e-18 97.1 115 52.2
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-18 97.1 58 79.3
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.7e-18 96.7 53 83.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.2e-18 96.3 104 58.7
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.2e-18 96.3 52 84.6
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.8e-18 95.5 104 58.7
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 5.0e-18 95.1 60 76.7
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 6.5e-18 94.7 48 89.6
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 6.5e-18 94.7 124 48.4
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.1e-17 94.0 53 79.2
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.1e-17 94.0 53 79.2
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 3.2e-17 92.4 60 75.0
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.5e-17 91.7 129 49.6
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 9.3e-17 90.9 113 54.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.2e-16 90.5 46 93.5
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.2e-16 90.5 62 71.0
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.6e-16 90.1 113 54.0
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.6e-16 90.1 53 79.2
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.6e-16 90.1 72 68.1
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 2.1e-16 89.7 89 58.4
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 3.5e-16 89.0 112 50.0
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 6.1e-16 88.2 108 50.9
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.3e-15 87.0 101 52.5
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.3e-15 87.0 114 45.6
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.3e-15 87.0 62 64.5
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.8e-15 86.7 66 68.2
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 3.0e-15 85.9 134 44.0
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.9e-15 85.5 50 80.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.9e-15 85.5 50 82.0
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 6.7e-15 84.7 52 75.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 8.7e-15 84.3 89 51.7
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 8.7e-15 84.3 47 85.1
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.7e-15 84.3 60 70.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.7e-15 84.3 60 70.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.1e-14 84.0 125 47.2
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.5e-14 83.6 92 55.4
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.5e-14 83.6 132 46.2
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.9e-14 83.2 46 82.6
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.9e-14 83.2 64 67.2
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.3e-14 82.4 46 82.6
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 9.7e-14 80.9 101 51.5
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.3e-13 80.5 44 79.5
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.3e-13 80.5 58 69.0
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.3e-13 80.5 58 69.0
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.3e-13 80.5 78 59.0
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.2e-13 79.7 101 50.5
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.8e-13 79.3 108 48.1
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.8e-13 79.3 75 53.3
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 2.8e-13 79.3 99 51.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.7e-13 79.0 50 76.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.8e-13 78.6 76 56.6
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 6.3e-13 78.2 85 57.6
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.3e-13 78.2 57 68.4
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 6.3e-13 78.2 52 69.2
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 6.3e-13 78.2 110 47.3
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 8.2e-13 77.8 94 52.1
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 8.2e-13 77.8 45 75.6
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.1e-12 77.4 57 66.7
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.4e-12 77.0 48 72.9
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.8e-12 76.6 124 46.0
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.8e-12 76.6 39 84.6
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.8e-12 76.6 47 74.5
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.4e-12 76.3 89 51.7
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 3.1e-12 75.9 41 85.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 4.1e-12 75.5 61 59.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 4.1e-12 75.5 40 87.5
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.3e-12 75.1 50 72.0
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 5.3e-12 75.1 103 48.5
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 6.9e-12 74.7 59 62.7
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 6.9e-12 74.7 62 62.9
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 6.9e-12 74.7 46 69.6
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 9.0e-12 74.3 83 53.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 9.0e-12 74.3 44 72.7
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.2e-11 73.9 91 51.6
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.2e-11 73.9 58 65.5
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.2e-11 73.9 46 71.7
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.0e-11 73.2 83 51.8
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.0e-11 73.2 44 72.7
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.0e-11 73.2 57 66.7
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 3.4e-11 72.4 36 88.9
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.4e-11 72.4 35 91.4
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 4.5e-11 72.0 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 4.5e-11 72.0 35 91.4
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 7.7e-11 71.2 45 71.1
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 1.0e-10 70.9 36 80.6
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.7e-10 70.1 36 80.6
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.9e-10 69.3 36 83.3
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 3.8e-10 68.9 101 41.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.1e-09 67.4 35 80.0
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 2.5e-09 66.2 122 36.9
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 9.4e-09 64.3 39 71.8
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 7.9e-08 61.2 117 34.2
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 2.5e-06 56.2 42 66.7


User provided reference genes

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