Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.1e-152 542.3 276 100.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.0e-54 216.9 198 62.1
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.3e-49 199.1 308 43.2
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.7e-48 196.1 344 39.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 6.9e-47 191.8 306 40.2
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.7e-46 188.3 347 37.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.0e-45 188.0 347 37.8
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.0e-45 188.0 340 39.4
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-45 187.6 307 40.7
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 6.5e-45 185.3 305 42.0
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 6.5e-45 185.3 305 42.0
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.2e-44 183.0 342 38.0
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.1e-43 180.3 330 39.1
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 7.9e-43 178.3 307 39.7
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 7.9e-43 178.3 307 40.1
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-42 176.4 305 38.4
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.9e-42 176.0 349 37.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.5e-41 173.3 305 38.0
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.7e-41 171.4 306 38.2
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.3e-40 171.0 307 38.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.8e-40 169.1 326 38.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.4e-39 166.8 328 36.0
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.1e-39 166.4 308 38.0
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 9.1e-39 164.9 271 40.6
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.4e-38 162.9 307 36.8
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.7e-37 160.6 150 54.0
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.9e-37 159.8 167 50.3
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 5.0e-37 159.1 355 34.6
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 6.5e-37 158.7 307 36.5
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 6.5e-37 158.7 150 53.3
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 8.5e-37 158.3 307 35.8
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 7.2e-36 155.2 354 33.6
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 6.1e-35 152.1 300 39.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.1e-35 152.1 302 39.1
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.7e-33 144.8 310 35.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.3e-32 144.4 239 40.6
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.7e-32 144.1 186 45.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.2e-32 143.7 307 35.2
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.8e-32 143.3 297 38.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-31 141.4 254 38.2
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.5e-30 137.5 330 34.5
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.1e-27 127.1 306 31.7
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.0e-25 120.6 309 32.7
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 9.7e-25 118.2 299 33.4
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 4.8e-24 115.9 123 49.6
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.0e-23 112.1 115 52.2
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.6e-22 110.2 326 29.1
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 6.5e-21 105.5 273 31.1
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 8.5e-21 105.1 301 30.6
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 2.5e-20 103.6 129 42.6
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 7.2e-20 102.1 236 33.9
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.1e-19 100.5 338 29.0
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.7e-19 100.1 338 29.0
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.7e-19 99.4 339 29.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.7e-19 99.4 338 28.7
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.1e-19 99.0 338 28.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 8.0e-19 98.6 339 28.3
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.4e-18 97.8 338 28.1
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.8e-18 97.4 333 30.3
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.3e-18 97.1 339 28.9
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.3e-18 97.1 339 28.9
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 5.2e-18 95.9 339 28.9
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.8e-18 95.1 250 32.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.2e-17 94.7 338 27.8
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.5e-17 94.4 374 29.1
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.0e-17 94.0 366 28.1
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 2.6e-17 93.6 339 28.6
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 4.4e-17 92.8 339 27.7
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 5.7e-17 92.4 339 28.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 7.5e-17 92.0 336 27.1
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 9.7e-17 91.7 339 28.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.2e-16 90.5 339 28.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-16 90.5 339 28.0
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-16 90.5 339 28.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.8e-16 90.1 338 27.5
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.7e-16 89.7 393 26.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 3.7e-16 89.7 338 26.6
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 6.3e-16 89.0 218 31.2
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.3e-16 88.6 264 30.3
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 8.3e-16 88.6 340 27.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 8.3e-16 88.6 381 27.6
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.1e-15 88.2 378 27.2
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.1e-15 88.2 337 27.9
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.1e-15 88.2 374 26.5
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.8e-15 87.4 318 28.9
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.8e-15 87.4 364 27.7
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.8e-15 87.4 250 28.8
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.4e-15 87.0 339 28.0
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.4e-15 87.0 339 27.4
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.1e-15 86.7 150 36.7
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 4.1e-15 86.3 177 33.9
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 4.1e-15 86.3 341 26.7
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 5.3e-15 85.9 339 26.8
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 5.3e-15 85.9 336 27.1
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.3e-15 85.9 339 27.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.2e-14 84.7 338 26.3
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.6e-14 84.3 342 26.0
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.5e-14 83.2 340 26.5
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 7.7e-14 82.0 221 30.3
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.0e-13 81.6 342 27.2
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-13 81.6 131 40.5
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.3e-13 81.3 364 26.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.3e-13 81.3 364 26.1
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.9e-13 80.1 382 25.7
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.9e-13 80.1 382 25.7
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 3.8e-13 79.7 249 30.9
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.8e-13 79.7 150 33.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.8e-13 79.7 287 27.9
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 3.8e-13 79.7 146 34.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 3.8e-13 79.7 370 25.1
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.0e-13 79.3 195 32.8
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.5e-13 78.6 382 26.2
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-13 78.6 337 25.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 8.5e-13 78.6 387 25.8
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 8.5e-13 78.6 150 34.7
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.9e-12 77.4 237 30.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.5e-12 77.0 322 25.5
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 3.2e-12 76.6 398 24.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.2e-12 76.3 385 25.5
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.5e-12 75.9 383 26.1
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 7.2e-12 75.5 123 37.4
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 7.2e-12 75.5 352 24.7
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 9.4e-12 75.1 385 25.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 2.7e-11 73.6 113 40.7
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.7e-11 73.6 364 25.0
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-10 71.2 176 26.7
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.4e-10 71.2 383 24.8
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.0e-10 69.7 86 51.2
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 5.2e-10 69.3 199 30.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 5.2e-10 69.3 184 31.0
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.2e-09 68.2 371 27.0
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-09 67.8 138 29.7
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.0e-09 67.4 342 24.9
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 2.8e-08 63.5 83 43.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 4.8e-08 62.8 114 31.6
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-07 61.6 147 26.5
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.4e-07 59.3 178 32.6
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 5.4e-07 59.3 274 27.4
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.0e-06 57.4 88 35.2
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.0e-06 57.4 58 50.0
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.5e-06 56.6 200 26.5
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.5e-06 56.2 63 42.9


User provided reference genes

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