Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 6.2e-172 607.4 323 100.0
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 3.6e-127 458.8 302 84.1
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.5e-125 453.4 306 82.4
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 1.9e-125 453.0 303 82.2
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 4.3e-125 451.8 302 82.8
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 2.2e-124 449.5 303 81.5
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 4.8e-124 448.4 302 82.8
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.1e-123 447.2 302 82.5
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.1e-123 447.2 302 82.5
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 4.1e-123 445.3 318 77.4
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 7.7e-122 441.0 302 80.5
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.8e-121 438.7 302 81.1
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 5.0e-121 438.3 302 80.5
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 8.5e-121 437.6 302 81.1
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 8.5e-121 437.6 302 80.1
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 9.4e-120 434.1 294 81.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.6e-119 433.3 305 80.3
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.8e-118 429.9 303 79.2
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.4e-109 398.7 305 75.7
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.1e-104 384.0 367 63.8
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.2e-104 382.5 264 80.7
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.6e-93 346.3 297 68.0
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 5.7e-93 345.1 294 69.4
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 2.0e-90 336.7 249 74.7
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.7e-89 333.6 306 64.7
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 6.5e-89 331.6 193 91.2
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 8.6e-89 331.3 308 63.0
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 8.6e-89 331.3 214 81.3
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.9e-88 330.1 302 62.6
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.2e-87 327.4 300 65.7
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 3.6e-87 325.9 303 64.7
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 4.7e-87 325.5 214 79.0
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 4.7e-87 325.5 302 63.6
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 6.1e-87 325.1 237 75.1
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 6.1e-87 325.1 302 64.6
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 6.1e-87 325.1 304 63.2
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 8.0e-87 324.7 246 72.4
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 8.0e-87 324.7 306 65.4
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 1.0e-86 324.3 237 75.1
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.0e-86 324.3 256 70.3
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 1.8e-86 323.6 303 62.7
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 2.3e-86 323.2 304 63.2
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.3e-86 323.2 280 66.1
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.0e-86 322.8 311 63.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 3.0e-86 322.8 256 70.7
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.0e-86 322.8 252 71.0
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.2e-86 322.0 219 76.7
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 5.2e-86 322.0 270 68.5
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.2e-85 320.9 308 62.7
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.2e-85 320.9 306 65.0
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 1.2e-85 320.9 270 68.1
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.2e-85 320.9 309 62.8
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.5e-85 320.5 306 62.1
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.5e-85 320.5 310 61.0
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.5e-85 320.5 308 63.0
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.5e-85 320.5 305 64.3
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.0e-85 320.1 218 78.4
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.0e-85 320.1 295 63.4
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.0e-85 320.1 300 61.0
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.6e-85 319.7 314 61.8
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.6e-85 319.7 219 75.8
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.6e-85 319.7 219 75.8
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 3.4e-85 319.3 237 73.0
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.4e-85 319.3 307 60.9
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 3.4e-85 319.3 263 68.8
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.4e-85 319.3 262 67.6
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 4.4e-85 318.9 248 71.8
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 5.7e-85 318.5 310 61.0
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 5.7e-85 318.5 295 61.7
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 5.7e-85 318.5 270 68.1
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 7.5e-85 318.2 311 61.7
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 7.5e-85 318.2 284 65.5
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 7.5e-85 318.2 218 78.0
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 9.8e-85 317.8 307 62.2
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 9.8e-85 317.8 310 62.3
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.3e-84 317.4 249 70.3
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.3e-84 317.4 227 76.2
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 1.7e-84 317.0 270 66.7
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.2e-84 316.6 310 61.0
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.2e-84 316.6 310 61.6
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.8e-84 316.2 308 62.0
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 3.7e-84 315.8 239 72.0
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 4.9e-84 315.5 307 63.5
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 6.3e-84 315.1 217 75.6
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 8.3e-84 314.7 218 77.1
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 8.3e-84 314.7 304 62.8
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.1e-83 314.3 213 77.9
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 3.1e-83 312.8 240 69.6
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 5.4e-83 312.0 221 75.6
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 5.4e-83 312.0 231 71.9
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 7.0e-83 311.6 306 60.5
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 7.0e-83 311.6 250 70.8
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.2e-82 310.8 296 62.2
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.6e-82 310.5 241 72.2
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.0e-82 310.1 309 60.8
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 3.5e-82 309.3 301 60.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.5e-82 309.3 287 64.5
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.7e-81 307.0 311 58.5
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.7e-81 307.0 307 59.6
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 3.8e-81 305.8 195 81.5
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 3.8e-81 305.8 309 61.8
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 5.0e-81 305.4 243 70.8
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 6.6e-81 305.1 288 62.5
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 8.6e-81 304.7 236 70.8
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.9e-80 303.5 320 58.4
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 2.5e-80 303.1 288 61.8
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.3e-80 302.8 211 74.4
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 4.3e-80 302.4 252 67.5
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 5.6e-80 302.0 306 60.1
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 5.6e-80 302.0 195 80.0
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.3e-80 301.6 315 59.4
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.2e-79 300.8 247 66.8
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 1.6e-79 300.4 201 77.6
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.1e-79 300.1 304 61.5
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.8e-79 299.7 288 61.1
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 6.1e-79 298.5 306 60.1
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.0e-78 297.7 302 58.9
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.4e-78 297.4 235 71.5
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 5.2e-78 295.4 266 64.7
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 6.8e-78 295.0 192 80.7
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.7e-76 290.4 303 58.7
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 2.9e-76 289.7 311 58.2
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 6.4e-76 288.5 204 73.5
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 8.3e-76 288.1 358 53.1
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.4e-75 287.3 310 57.4
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.0e-75 285.0 204 73.5
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 2.7e-74 283.1 367 49.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.9e-72 276.9 204 70.1
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.2e-71 274.2 200 71.5
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.1e-70 271.2 284 56.7
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 8.9e-70 268.1 273 57.9
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 8.9e-70 268.1 229 66.4
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 2.6e-69 266.5 182 75.8
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 5.8e-69 265.4 188 73.4
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.2e-68 263.5 204 69.6
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 3.7e-68 262.7 230 65.7
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 4.9e-68 262.3 206 68.9
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 4.9e-68 262.3 292 57.5
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.4e-68 261.9 356 50.0
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.4e-67 260.0 189 70.4
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 2.7e-66 256.5 253 58.1
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 4.6e-66 255.8 251 57.8
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.1e-62 244.6 267 51.7
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 3.4e-61 239.6 182 69.8
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 4.4e-53 212.6 181 61.9
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 4.1e-51 206.1 190 60.0
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.1e-46 191.4 194 59.3
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.9e-44 183.3 128 75.8
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 2.9e-44 183.3 183 55.2
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 9.0e-38 161.8 107 80.4
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 3.8e-36 156.4 206 47.1
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 5.1e-33 146.0 274 37.2
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.9e-32 144.1 98 75.5
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 2.8e-31 140.2 89 78.7
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 4.5e-29 132.9 235 37.9
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.6e-23 114.4 209 37.8
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.0e-21 107.5 76 73.7
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 7.6e-21 105.5 78 75.6
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.1e-19 101.7 87 60.9
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.9e-19 100.9 63 82.5
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 5.5e-19 99.4 63 81.0
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 1.0e-12 78.6 170 34.1
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.2e-10 71.6 42 83.3
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 1.4e-06 58.2 48 58.3


User provided reference genes

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