Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.2e-194 682.9 338 100.0
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.4e-173 611.7 342 89.2
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 7.6e-173 610.5 345 88.7
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 5.0e-172 607.8 345 88.1
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.6e-170 601.7 345 87.5
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.6e-170 601.3 342 86.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 4.6e-170 601.3 343 87.8
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-169 599.4 343 87.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.9e-169 598.2 345 87.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-168 596.7 335 89.6
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.9e-168 595.9 345 86.1
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.3e-168 595.1 335 89.0
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.7e-167 591.7 336 86.9
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.7e-167 591.7 336 86.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.1e-166 590.1 336 86.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 9.0e-166 587.0 335 87.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.1e-160 570.1 344 84.0
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-158 563.5 324 87.0
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.1e-155 553.5 353 80.2
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-154 550.1 336 81.2
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.0e-153 547.0 349 79.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 2.4e-150 535.8 317 84.9
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.5e-147 525.8 336 78.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.6e-138 495.4 339 73.7
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 4.7e-138 495.0 339 74.6
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 6.1e-138 494.6 343 74.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 6.1e-138 494.6 351 71.8
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 2.0e-136 489.6 339 72.6
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.4e-136 488.4 356 71.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.2e-135 486.1 339 71.7
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.8e-135 485.7 339 71.7
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 3.7e-135 485.3 338 72.5
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 8.3e-135 484.2 355 71.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 8.3e-135 484.2 339 73.2
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.1e-134 483.8 350 70.6
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.4e-134 483.4 339 72.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.4e-134 483.4 338 72.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.8e-134 483.0 339 73.2
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 4.1e-134 481.9 351 70.4
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 4.1e-134 481.9 359 70.5
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.6e-133 479.9 336 72.0
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 5.9e-133 478.0 338 71.9
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 5.9e-133 478.0 357 70.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 7.7e-133 477.6 348 70.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 6.5e-132 474.6 350 70.3
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.5e-131 473.4 348 69.5
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.5e-131 473.4 337 71.8
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.5e-131 473.4 338 70.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.9e-131 473.0 339 72.0
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.5e-131 472.6 351 70.4
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.2e-131 472.2 354 68.9
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-130 470.3 349 69.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-130 470.3 348 69.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.2e-130 470.3 346 68.5
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-130 469.9 349 69.1
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-130 469.9 349 69.1
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.1e-130 469.5 348 69.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.7e-130 469.2 339 69.3
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.7e-130 468.4 349 69.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.7e-130 468.4 349 69.1
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 8.0e-130 467.6 341 70.7
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.0e-129 467.2 354 68.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-129 466.8 339 69.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.0e-129 465.7 336 69.9
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.8e-129 464.5 359 69.1
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 8.8e-129 464.2 348 69.3
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.8e-129 464.2 348 68.1
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 8.8e-129 464.2 339 68.7
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 8.8e-129 464.2 364 68.4
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.2e-128 463.8 354 68.6
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.5e-128 463.4 332 73.2
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.0e-128 463.0 346 67.6
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 3.4e-128 462.2 337 70.6
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 9.8e-128 460.7 344 68.0
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 9.8e-128 460.7 354 68.6
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.8e-128 460.7 348 68.1
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.8e-127 459.1 350 67.7
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.9e-127 458.4 346 68.2
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 4.9e-127 458.4 366 67.2
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 6.3e-127 458.0 355 67.0
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.2e-125 453.8 353 67.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.6e-125 453.4 347 68.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.7e-125 452.6 345 66.4
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.5e-125 452.2 345 67.2
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 4.5e-125 451.8 349 66.8
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 3.8e-124 448.7 349 66.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 8.6e-124 447.6 347 66.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.5e-123 446.8 371 64.4
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.9e-123 446.4 371 64.7
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 7.3e-123 444.5 344 67.4
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 7.3e-123 444.5 338 67.2
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.1e-122 443.0 349 66.2
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.0e-121 440.7 344 66.6
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.0e-121 440.7 347 65.1
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.4e-121 440.3 347 65.1
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.3e-121 439.5 373 62.7
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.3e-121 439.5 347 64.8
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 5.2e-121 438.3 362 64.1
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.0e-120 436.4 346 65.3
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 9.8e-120 434.1 341 66.0
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.9e-119 432.6 367 64.6
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.1e-118 430.6 339 67.3
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.8e-118 429.9 363 63.1
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 7.0e-118 427.9 337 64.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.7e-116 423.3 330 66.1
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 2.3e-116 422.9 337 64.1
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.6e-114 415.6 341 65.4
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.7e-114 415.2 323 65.9
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 6.2e-114 414.8 333 63.7
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 6.8e-113 411.4 347 61.7
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.6e-112 409.5 374 58.6
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 4.4e-112 408.7 352 59.9
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 9.8e-112 407.5 365 60.5
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 6.4e-111 404.8 344 62.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.0e-109 399.8 334 62.9
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.7e-109 399.4 368 60.6
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.0e-108 395.2 364 56.9
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 7.3e-107 391.3 328 63.7
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.1e-105 387.5 412 52.4
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.8e-105 386.7 318 66.0
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.6e-104 382.9 338 58.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 5.8e-104 381.7 353 58.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.9e-103 379.4 519 45.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 7.1e-102 374.8 305 63.9
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.6e-101 373.6 354 58.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.0e-100 369.4 358 56.4
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.1e-99 367.5 326 60.1
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.6e-96 354.8 323 60.1
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 9.2e-94 347.8 425 48.9
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.9e-91 340.1 407 49.1
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.2e-89 332.0 363 53.4
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 7.6e-88 328.2 164 90.9
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 7.1e-86 321.6 349 52.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.7e-85 319.7 310 58.1
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 9.9e-80 301.2 340 50.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 6.4e-79 298.5 378 47.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.7e-77 293.1 363 46.0
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 9.6e-75 284.6 229 62.9
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.6e-66 257.3 226 65.5
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.6e-64 250.0 297 52.2
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 5.8e-64 248.8 243 56.4
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 5.8e-64 248.8 243 56.4
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 8.4e-63 245.0 360 44.4
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 9.3e-62 241.5 367 42.5
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 4.6e-61 239.2 159 65.4
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.9e-61 238.4 205 65.9
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.6e-58 230.7 341 42.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 9.0e-57 224.9 386 38.9
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.5e-54 216.9 206 59.2
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 5.1e-52 209.1 183 61.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.7e-47 194.1 135 74.1
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 5.5e-46 189.1 161 64.0
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 7.2e-38 162.2 133 57.1
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.7e-34 151.0 71 88.7
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.7e-34 151.0 339 33.0
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.2e-34 150.6 375 30.9
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.6e-29 133.3 121 56.2
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 8.0e-29 132.1 104 62.5
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 4.1e-17 93.2 84 59.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.2e-14 83.2 63 65.1
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.7e-08 63.9 33 78.8


User provided reference genes

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