Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 1.6e-58 229.2 114 100.0
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 2.8e-34 148.7 101 74.3
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 1.1e-33 146.7 101 76.2
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 1.1e-33 146.7 101 76.2
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 1.1e-33 146.7 101 76.2
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 1.1e-33 146.7 101 76.2
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 6.8e-33 144.1 101 75.2
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 6.8e-33 144.1 101 75.2
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 6.8e-33 144.1 111 70.3
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 1.2e-32 143.3 101 75.2
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 4.4e-32 141.4 101 73.3
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 9.9e-32 140.2 111 70.3
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 9.9e-32 140.2 111 70.3
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 9.9e-32 140.2 101 71.3
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 9.9e-32 140.2 101 72.3
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 2.9e-31 138.7 109 70.6
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 2.9e-31 138.7 111 69.4
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 2.9e-31 138.7 111 69.4
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 2.9e-31 138.7 109 70.6
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 3.8e-31 138.3 96 72.9
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 4.9e-31 137.9 101 72.3
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 6.0e-29 131.0 101 71.3
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 7.3e-27 124.0 100 62.0
BcaC01g03061 Brassica carinata HOM05D003638 ORTHO05D003202 1.1e-22 110.2 92 66.3
C03p56510 Brassica napus HOM05D003638 ORTHO05D003202 1.1e-22 110.2 92 66.3
BolC3t17937H Brassica oleracea HOM05D003638 ORTHO05D003202 1.1e-22 110.2 92 66.3
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 1.4e-22 109.8 100 60.0
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 4.2e-22 108.2 100 59.0
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 5.4e-22 107.8 100 58.0
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 5.4e-22 107.8 101 62.4
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.0e-20 103.6 100 59.0
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.0e-20 103.6 111 52.3
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.0e-20 103.6 105 57.1
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.7e-20 102.8 100 58.0
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 1.5e-19 99.8 97 58.8
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 1.9e-19 99.4 104 55.8
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.5e-19 99.0 100 55.0
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 7.3e-19 97.4 100 62.0
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 9.6e-19 97.1 101 58.4
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 9.6e-19 97.1 100 62.0
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.3e-18 96.7 101 58.4
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 1.6e-18 96.3 100 57.0
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.6e-18 96.3 100 60.0
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 2.8e-18 95.5 102 55.9
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 4.8e-18 94.7 101 56.4
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 8.1e-18 94.0 97 58.8
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 2.4e-17 92.4 100 55.0
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 3.1e-17 92.0 100 56.0
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 3.1e-17 92.0 101 53.5
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 3.1e-17 92.0 100 54.0
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 4.0e-17 91.7 100 58.0
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 4.0e-17 91.7 100 53.0
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 6.9e-17 90.9 93 58.1
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 9.0e-17 90.5 100 55.0
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.2e-16 90.1 96 58.3
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 2.0e-16 89.4 100 53.0
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 2.6e-16 89.0 101 52.5
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 4.5e-16 88.2 97 52.6
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 4.5e-16 88.2 100 55.0
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.5e-16 88.2 100 55.0
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.5e-16 88.2 100 55.0
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.5e-16 88.2 100 55.0
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.5e-16 88.2 100 55.0
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 1.3e-15 86.7 97 54.6
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 1.3e-15 86.7 95 55.8
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.3e-15 86.7 104 51.9
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.7e-15 86.3 101 48.5
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 2.9e-15 85.5 95 54.7
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 4.9e-15 84.7 101 48.5
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 8.4e-15 84.0 105 49.5
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 1.1e-14 83.6 100 52.0
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 1.9e-14 82.8 96 52.1
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 1.9e-14 82.8 96 52.1
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 1.9e-14 82.8 96 52.1
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.9e-14 82.8 100 50.0
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 2.4e-14 82.4 96 53.1
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 3.2e-14 82.0 97 52.6
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 3.2e-14 82.0 95 53.7
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 4.2e-14 81.6 100 48.0
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 5.4e-14 81.3 97 52.6
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 5.4e-14 81.3 103 50.5
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 5.4e-14 81.3 101 48.5
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 9.3e-14 80.5 96 53.1
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 1.6e-13 79.7 100 50.0
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 1.6e-13 79.7 97 53.6
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 2.7e-13 79.0 101 52.5
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 3.5e-13 78.6 100 51.0
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 4.6e-13 78.2 99 50.5
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.6e-13 78.2 95 52.6
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 6.0e-13 77.8 100 51.0
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 7.9e-13 77.4 101 51.5
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 2.3e-12 75.9 60 63.3
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 2.3e-12 75.9 96 50.0
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 3.0e-12 75.5 101 44.6
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 3.9e-12 75.1 103 42.7
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 5.1e-12 74.7 105 49.5
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 6.7e-12 74.3 100 44.0
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 8.7e-12 73.9 96 47.9
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 8.7e-12 73.9 99 44.4
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 1.1e-11 73.6 103 44.7
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 1.9e-11 72.8 99 43.4
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 2.5e-11 72.4 87 50.6
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 2.5e-11 72.4 97 48.5
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 4.3e-11 71.6 99 45.5
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 5.6e-11 71.2 101 48.5
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 7.4e-11 70.9 99 43.4
PSO170G3167 Papaver somniferum HOM05D003638 ORTHO05D003202 7.4e-11 70.9 101 46.5
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 9.6e-11 70.5 101 47.5
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.3e-10 70.1 96 50.0
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 2.1e-10 69.3 95 44.2
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 2.1e-10 69.3 104 44.2
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 2.1e-10 69.3 101 45.5
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 2.1e-10 69.3 99 44.4
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.8e-10 68.9 96 45.8
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 3.6e-10 68.6 95 46.3
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 4.8e-10 68.2 94 46.8
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.8e-10 68.2 96 47.9
SHI03245 Sapria himalayana HOM05D003638 ORTHO05D003202 8.1e-10 67.4 60 56.7
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 8.1e-10 67.4 95 46.3
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 1.1e-09 67.0 101 44.6
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 1.1e-09 67.0 95 46.3
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 1.4e-09 66.6 102 43.1
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 1.4e-09 66.6 96 49.0
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 1.4e-09 66.6 95 46.3
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 1.8e-09 66.2 101 44.6
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 3.1e-09 65.5 97 45.4
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 4.0e-09 65.1 60 56.7
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 5.3e-09 64.7 100 46.0
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 1.5e-08 63.2 99 45.5
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.5e-08 61.6 95 41.1
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 5.8e-08 61.2 96 43.8
ECA236G1572 Erigeron canadensis HOM05D003638 ORTHO05D003202 7.6e-08 60.8 96 43.8
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 7.6e-08 60.8 104 40.4
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 9.9e-08 60.5 106 39.6
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 9.9e-08 60.5 94 45.7
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 9.9e-08 60.5 99 40.4
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 9.9e-08 60.5 100 46.0
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 1.3e-07 60.1 102 45.1
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 2.2e-07 59.3 104 43.3
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 2.2e-07 59.3 97 45.4
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 2.9e-07 58.9 104 40.4
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 3.8e-07 58.5 96 45.8
Zm00001eb374880 Zea mays HOM05D003638 ORTHO05D003202 6.4e-07 57.8 99 42.4
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 8.4e-07 57.4 97 44.3
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.1e-06 57.0 104 45.2
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.1e-06 57.0 104 45.2
unitig_748.g7180 Utricularia gibba HOM05D001212 ORTHO05D000246 1.4e-06 56.6 99 36.4
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 1.9e-06 56.2 96 44.8
Psat4g033360 Pisum sativum HOM05D003638 ORTHO05D003202 1.9e-06 56.2 93 41.9
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 4.2e-06 55.1 103 39.8
arahy.Tifrunner.gnm1.ann1.S7JRIG Arachis hypogaea HOM05D003638 ORTHO05D003202 5.5e-06 54.7 106 37.7
HanXRQChr05g0137971 Helianthus annuus HOM05D003638 ORTHO05D003202 5.5e-06 54.7 96 42.7
HanXRQChr12g0357031 Helianthus annuus HOM05D003638 ORTHO05D003202 5.5e-06 54.7 98 46.9
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 7.1e-06 54.3 108 38.9
AUR62011262 Chenopodium quinoa HOM05D006568 ORTHO05D008342 9.3e-06 53.9 94 41.5
HanXRQChr10g0315321 Helianthus annuus HOM05D003638 ORTHO05D003202 9.3e-06 53.9 100 43.0
Medtr4g116480 Medicago truncatula HOM05D003638 ORTHO05D003202 9.3e-06 53.9 92 43.5


User provided reference genes

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