Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 5.4e-57 224.2 118 100.0
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 1.1e-20 103.6 117 52.1
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 4.0e-20 101.7 116 51.7
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 1.5e-19 99.8 116 50.0
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 1.5e-19 99.8 116 50.0
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 5.8e-19 97.8 118 48.3
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 7.6e-19 97.4 117 52.1
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 9.9e-19 97.1 119 48.7
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 1.3e-18 96.7 114 50.0
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 1.7e-18 96.3 120 50.8
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 1.1e-17 93.6 116 50.9
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 1.4e-17 93.2 112 52.7
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 1.4e-17 93.2 116 50.9
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 1.4e-17 93.2 116 50.9
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 2.4e-17 92.4 113 46.0
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 3.2e-17 92.0 67 68.7
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 1.6e-16 89.7 63 65.1
Aa31LG9G3330 Aethionema arabicum HOM05D005927 ORTHO05D006952 2.7e-16 89.0 99 49.5
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 7.9e-16 87.4 108 47.2
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.0e-15 87.0 108 47.2
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 1.1e-14 83.6 113 39.8
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 1.9e-14 82.8 85 54.1
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 2.5e-14 82.4 80 52.5
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 2.5e-14 82.4 80 52.5
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 2.5e-14 82.4 85 50.6
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 3.3e-14 82.0 81 54.3
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 3.3e-14 82.0 64 65.6
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 4.3e-14 81.6 110 43.6
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 5.6e-14 81.3 94 47.9
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 5.6e-14 81.3 94 47.9
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 5.6e-14 81.3 108 50.0
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 7.4e-14 80.9 110 44.5
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 1.3e-13 80.1 84 47.6
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 2.1e-13 79.3 108 43.5
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 2.8e-13 79.0 84 50.0
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 2.8e-13 79.0 84 48.8
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 4.8e-13 78.2 84 47.6
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 4.8e-13 78.2 110 44.5
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 4.8e-13 78.2 82 52.4
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 4.8e-13 78.2 88 48.9
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 4.8e-13 78.2 117 41.0
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 6.2e-13 77.8 106 39.6
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 6.2e-13 77.8 108 44.4
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 8.1e-13 77.4 119 42.9
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 8.1e-13 77.4 84 48.8
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 8.1e-13 77.4 112 38.4
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 8.1e-13 77.4 89 49.4
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.4e-12 76.6 112 37.5
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.8e-12 76.3 112 37.5
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 2.4e-12 75.9 112 38.4
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 2.4e-12 75.9 117 39.3
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 3.1e-12 75.5 84 45.2
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 3.1e-12 75.5 84 48.8
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 3.1e-12 75.5 110 42.7
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 3.1e-12 75.5 87 49.4
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 5.3e-12 74.7 106 42.5
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 5.3e-12 74.7 84 48.8
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 6.9e-12 74.3 84 48.8
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 6.9e-12 74.3 84 48.8
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 6.9e-12 74.3 84 46.4
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 6.9e-12 74.3 80 51.2
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 9.0e-12 73.9 116 42.2
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 9.0e-12 73.9 84 48.8
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.2e-11 73.6 84 52.4
Manes.05G202960 Manihot esculenta HOM05D005927 ORTHO05D006952 1.2e-11 73.6 110 37.3
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 1.2e-11 73.6 106 42.5
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 1.5e-11 73.2 84 48.8
CARHR220010 Cardamine hirsuta HOM05D005927 ORTHO05D006952 1.5e-11 73.2 118 40.7
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 2.0e-11 72.8 83 48.2
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 3.4e-11 72.0 115 38.3
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 4.5e-11 71.6 82 48.8
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.8e-11 71.2 84 47.6
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 5.8e-11 71.2 89 46.1
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.6e-11 70.9 84 48.8
AUR62020874 Chenopodium quinoa HOM05D005927 ORTHO05D006952 9.9e-11 70.5 75 49.3
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 1.3e-10 70.1 82 46.3
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 1.3e-10 70.1 85 45.9
COL.COLO4_05437 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.7e-10 69.7 88 47.7
Duzib268G0459 Durio zibethinus HOM05D005927 ORTHO05D006952 1.7e-10 69.7 88 46.6
ECA238G2825 Erigeron canadensis HOM05D005927 ORTHO05D006952 1.7e-10 69.7 114 37.7
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.2e-10 69.3 117 38.5
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 2.2e-10 69.3 108 38.9
Potri.001G321500 Populus trichocarpa HOM05D005927 ORTHO05D006952 2.2e-10 69.3 104 35.6
Migut.N00426 Erythranthe guttata HOM05D005927 ORTHO05D006952 2.9e-10 68.9 124 39.5
CSS0031533 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.8e-10 68.6 62 51.6
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.8e-10 68.6 80 47.5
CARHR220020 Cardamine hirsuta HOM05D005927 ORTHO05D006952 3.8e-10 68.6 110 38.2
AUR62018545 Chenopodium quinoa HOM05D005927 ORTHO05D006952 3.8e-10 68.6 73 47.9
Ciclev10006262m.g Citrus clementina HOM05D005927 ORTHO05D006952 3.8e-10 68.6 101 37.6
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 3.8e-10 68.6 121 38.0
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 3.8e-10 68.6 121 38.0
Nitab4.5_0019370g0010 Nicotiana tabacum HOM05D005927 ORTHO05D006952 4.9e-10 68.2 61 57.4
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.4e-10 67.8 82 45.1
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 6.4e-10 67.8 104 41.3
Cfa008638 Carpinus fangiana HOM05D005927 ORTHO05D006952 8.4e-10 67.4 65 53.8
DCAR_026663 Daucus carota HOM05D005927 ORTHO05D006952 1.1e-09 67.0 86 45.3
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 1.1e-09 67.0 115 37.4
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.9e-09 66.2 84 45.2
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 1.9e-09 66.2 62 53.2
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 2.4e-09 65.9 102 40.2
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 2.4e-09 65.9 80 41.2
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 3.2e-09 65.5 113 41.6
Haze_11664 Corylus avellana HOM05D005927 ORTHO05D006952 4.2e-09 65.1 80 46.2
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 5.5e-09 64.7 74 47.3
CSS0014727 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 9.3e-09 63.9 54 48.1
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 1.2e-08 63.5 109 38.5
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 6.0e-08 61.2 107 42.1
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 1.0e-07 60.5 117 35.0
CiPaw.01G115500 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.8e-07 59.7 108 35.2
Prupe.1G167200 Prunus persica HOM05D005927 ORTHO05D006952 1.8e-07 59.7 67 50.7
Atru.chr4.1553 Acer truncatum HOM05D005927 ORTHO05D006952 2.3e-07 59.3 65 50.8
CiPaw.02G063500 Carya illinoinensis HOM05D005927 ORTHO05D006952 2.3e-07 59.3 104 38.5
CSS0034135 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 3.0e-07 58.9 92 35.9
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 5.1e-07 58.2 118 34.7
Hma1.2p1_0208F.1_g088210 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 6.7e-07 57.8 81 42.0
Hma1.2p1_0736F.1_g210730 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 8.7e-07 57.4 81 42.0
PSO832G1033 Papaver somniferum HOM05D000668 ORTHO05D000516 8.7e-07 57.4 115 37.4
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 8.7e-07 57.4 113 35.4
Nitab4.5_0008329g0040 Nicotiana tabacum HOM05D000668 ORTHO05D000516 1.1e-06 57.0 112 35.7
AUR62015303 Chenopodium quinoa HOM05D000668 ORTHO05D000516 1.5e-06 56.6 118 28.8
Potri.017G059900 Populus trichocarpa HOM05D005927 ORTHO05D006952 1.5e-06 56.6 103 33.0
AUR62032002 Chenopodium quinoa HOM05D000668 ORTHO05D000516 1.9e-06 56.2 79 34.2
Actinidia05645 Actinidia chinensis HOM05D000668 ORTHO05D000516 2.5e-06 55.8 81 40.7
Gohir.A09G207300 Gossypium hirsutum HOM05D005927 ORTHO05D006952 2.5e-06 55.8 81 40.7
PSO210G2986 Papaver somniferum HOM05D000668 ORTHO05D000516 2.5e-06 55.8 115 36.5
SGA_v2.0_scaffold36G14400 Striga asiatica HOM05D000668 ORTHO05D000516 2.5e-06 55.8 95 34.7
EL10Ac3g06595 Beta vulgaris HOM05D000668 ORTHO05D000516 3.3e-06 55.5 85 37.6
Nitab4.5_0002344g0010 Nicotiana tabacum HOM05D000668 ORTHO05D000516 3.3e-06 55.5 112 34.8
Duzib151G0391 Durio zibethinus HOM05D005927 ORTHO05D006952 4.3e-06 55.1 73 43.8
Gohir.D09G200900 Gossypium hirsutum HOM05D005927 ORTHO05D006952 4.3e-06 55.1 79 44.3
SEGI_33666 Sequoiadendron giganteum HOM05D000668 ORTHO05D000516 4.3e-06 55.1 89 37.1
THA.LOC104818714 Tarenaya hassleriana HOM05D000668 ORTHO05D000516 4.3e-06 55.1 124 33.9
AUR62032736 Chenopodium quinoa HOM05D000668 ORTHO05D000516 7.4e-06 54.3 79 35.4
Haze_22049 Corylus avellana HOM05D005927 ORTHO05D006952 7.4e-06 54.3 62 46.8
Eucgr.B01916 Eucalyptus grandis HOM05D000668 ORTHO05D000516 7.4e-06 54.3 113 38.1
Sc22g0002060 Simmondsia chinensis HOM05D000668 ORTHO05D000516 7.4e-06 54.3 114 32.5
Gorai.006G224600 Gossypium raimondii HOM05D005927 ORTHO05D006952 9.6e-06 53.9 66 45.5
TPR.G16324 Trifolium pratense HOM05D000668 ORTHO05D000516 9.6e-06 53.9 110 33.6


User provided reference genes

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