Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 0.0e+00 1397.5 700 100.0
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 0.0e+00 1154.0 709 82.1
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 0.0e+00 1147.5 710 81.7
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 0.0e+00 1145.2 709 82.1
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 0.0e+00 1141.7 709 81.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 0.0e+00 1140.9 707 80.9
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 0.0e+00 1137.1 710 80.4
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 0.0e+00 1130.5 709 80.1
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 0.0e+00 1130.5 710 80.1
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 0.0e+00 1128.2 710 79.6
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 0.0e+00 1127.9 710 79.6
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 0.0e+00 1125.9 710 79.4
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 0.0e+00 1124.8 709 80.5
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 0.0e+00 1123.2 710 79.3
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 3.5e-305 1051.2 707 75.1
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 1.4e-274 949.5 702 66.7
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 3.5e-273 944.9 681 67.4
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 7.9e-273 943.7 709 65.9
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 8.7e-272 940.3 707 66.5
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.1e-271 939.9 709 66.1
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.5e-271 939.5 708 66.4
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.1e-269 931.8 734 64.3
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 5.3e-269 931.0 701 65.3
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 2.0e-268 929.1 701 65.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 2.6e-268 928.7 679 67.3
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 2.5e-266 922.2 708 64.8
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 2.5e-266 922.2 678 67.1
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 9.3e-266 920.2 670 67.6
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 3.5e-265 918.3 689 65.3
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 8.7e-264 913.7 662 67.8
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.5e-263 912.1 772 60.8
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 5.7e-263 911.0 663 67.0
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 9.7e-263 910.2 663 66.5
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.6e-262 909.4 701 65.5
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 8.2e-262 907.1 709 63.0
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 1.1e-261 906.7 685 65.0
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.7e-259 899.4 707 62.9
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 5.0e-259 897.9 706 62.0
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 8.5e-259 897.1 681 64.6
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.4e-258 896.3 706 62.2
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 4.2e-258 894.8 748 61.1
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 7.2e-258 894.0 704 63.8
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 9.4e-258 893.6 690 63.2
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.2e-257 893.3 692 63.9
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 1.8e-256 889.4 706 61.8
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 3.0e-256 888.6 706 61.8
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 3.9e-256 888.3 665 64.4
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 3.9e-256 888.3 705 61.8
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 5.1e-256 887.9 712 60.7
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 6.7e-256 887.5 672 64.1
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 6.7e-256 887.5 690 62.9
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 8.8e-256 887.1 707 60.8
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 3.3e-255 885.2 706 61.8
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 7.4e-255 884.0 662 64.7
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 2.2e-254 882.5 706 60.8
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 3.7e-254 881.7 666 64.4
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 6.3e-254 880.9 654 65.4
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.8e-253 879.4 667 65.1
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 2.0e-252 875.9 669 62.8
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.6e-252 875.5 734 59.5
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 3.4e-252 875.2 706 60.9
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 8.5e-251 870.5 708 62.1
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 3.2e-250 868.6 707 61.7
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 7.9e-249 864.0 711 60.1
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.0e-248 863.6 689 61.8
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 2.3e-248 862.4 662 64.8
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 8.8e-248 860.5 716 59.6
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 4.4e-247 858.2 710 61.4
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.3e-246 856.7 708 59.3
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.1e-245 853.6 686 60.1
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.8e-245 852.8 686 60.1
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.2e-244 850.1 718 59.2
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.5e-242 843.2 613 66.9
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 8.2e-238 827.4 698 59.0
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.0e-236 822.8 669 60.2
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.5e-236 821.6 689 59.8
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.3e-235 820.1 664 59.9
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 2.9e-235 818.9 667 62.1
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 3.8e-235 818.5 649 63.0
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.2e-228 797.0 737 57.1
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 1.0e-224 783.9 705 57.6
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 2.8e-222 775.8 675 57.6
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 1.6e-220 770.0 664 58.4
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 1.4e-216 756.9 538 67.5
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.8e-213 746.5 616 61.5
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.9e-210 736.5 570 62.8
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.8e-209 732.6 629 59.6
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 8.0e-209 731.1 979 43.3
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 6.0e-204 714.9 524 67.9
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.3e-203 713.8 477 71.7
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 8.6e-203 711.1 693 52.8
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 3.3e-202 709.1 701 53.8
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.6e-201 706.8 513 67.1
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.3e-190 670.6 703 51.9
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.4e-184 650.6 577 55.8
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.7e-179 633.6 637 52.0
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 1.4e-176 624.0 689 46.6
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.3e-171 607.4 430 67.4
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 2.8e-169 599.7 675 47.1
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 5.5e-149 532.3 413 60.8
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 8.5e-142 508.4 335 71.6
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.0e-134 485.0 369 63.4
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 4.1e-128 463.0 496 47.4
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 1.4e-120 438.0 384 56.0
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 4.0e-115 419.9 385 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.4e-107 394.8 440 46.8
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.4e-104 384.8 325 58.2
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.6e-100 371.3 310 58.4
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 4.4e-98 363.2 285 62.5
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 1.8e-96 357.8 753 35.7
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 8.9e-91 339.0 257 64.6
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 7.5e-90 335.9 274 61.7
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.2e-84 318.5 272 58.8
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 2.0e-82 311.2 354 46.9
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 1.2e-76 292.0 233 61.8
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-73 280.4 385 41.0
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.1e-67 262.3 285 50.9
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 9.9e-66 255.8 652 30.2
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 8.1e-60 236.1 425 34.8
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 2.2e-57 228.0 627 29.8
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 7.1e-40 169.9 360 34.7
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 6.0e-39 166.8 273 36.6
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 8.7e-38 162.9 137 57.7
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 9.0e-35 152.9 129 59.7
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.6e-34 149.8 111 69.4
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 3.2e-32 144.4 100 72.0
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.2e-31 142.5 215 40.5
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.0e-30 137.9 226 38.5
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.7e-28 132.1 223 38.6
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.1e-23 115.2 123 48.0
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 2.2e-20 105.1 74 68.9
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 3.4e-18 97.8 85 51.8
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.5e-16 91.7 135 35.6
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.4e-14 85.9 383 25.1
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.0e-13 82.0 430 23.5
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.3e-13 81.3 87 51.7
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 7.4e-13 80.1 92 42.4
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.2e-12 78.6 46 73.9
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.2e-12 76.6 53 62.3
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.1e-11 76.3 46 71.7
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-10 72.8 46 69.6
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 2.0e-10 72.0 60 66.7
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 2.6e-10 71.6 58 56.9
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.6e-10 71.6 50 64.0
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 2.6e-10 71.6 132 38.6
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 2.7e-07 61.6 206 30.6
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 1.0e-06 59.7 49 59.2
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 2.3e-06 58.5 39 66.7


User provided reference genes

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