Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 0.0e+00 1603.6 885 100.0
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 7.6e-63 246.5 1142 29.0
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.1e-57 228.4 1169 28.0
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.8e-57 228.0 1093 29.7
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.1e-53 216.1 1021 30.8
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 1.2e-47 196.1 974 29.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.4e-46 189.9 1012 27.2
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.2e-33 148.7 1027 26.0
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 1.8e-32 145.6 1009 26.8
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 1.2e-31 142.9 999 25.8
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 2.0e-31 142.1 998 26.1
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 5.0e-30 137.5 1024 25.8
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.4e-26 124.4 1102 25.0
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 2.1e-20 105.5 1008 24.3
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.6e-20 104.8 1177 25.5
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 3.7e-17 94.7 927 24.1
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 7.0e-16 90.5 929 24.5
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 3.5e-15 88.2 929 24.4
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 7.7e-15 87.0 87 43.7
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 2.9e-14 85.1 885 25.1
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 4.2e-13 81.3 85 45.9
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.5e-13 80.9 150 38.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-12 79.0 148 35.1
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.1e-12 79.0 99 41.4
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 2.7e-12 78.6 81 43.2
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.7e-12 78.6 81 44.4
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 4.7e-12 77.8 94 40.4
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 4.7e-12 77.8 81 42.0
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 8.0e-12 77.0 81 43.2
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 8.0e-12 77.0 90 43.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.4e-11 76.3 88 40.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.4e-11 76.3 439 25.3
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.4e-11 76.3 81 42.0
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 3.0e-11 75.1 80 45.0
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 4.0e-11 74.7 80 45.0
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 4.0e-11 74.7 83 44.6
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 5.2e-11 74.3 80 42.5
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.7e-11 73.9 86 43.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 6.7e-11 73.9 80 45.0
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 8.8e-11 73.6 93 40.9
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 8.8e-11 73.6 144 34.7
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.2e-10 73.2 88 39.8
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.5e-10 72.8 88 40.9
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 1.5e-10 72.8 139 30.2
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 1.5e-10 72.8 914 24.8
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.3e-10 71.6 86 38.4
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.4e-10 71.2 300 24.7
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.4e-10 71.2 112 33.0
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.7e-10 70.9 80 42.5
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 7.5e-10 70.5 82 42.7
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.5e-10 70.5 389 25.7
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 7.5e-10 70.5 83 39.8
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 7.5e-10 70.5 83 39.8
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 7.5e-10 70.5 97 41.2
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.3e-09 69.7 334 27.2
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.7e-09 69.3 88 37.5
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.8e-09 68.6 130 33.8
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.8e-09 67.8 168 36.9
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 4.8e-09 67.8 95 38.9
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 6.3e-09 67.4 80 40.0
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 8.2e-09 67.0 82 41.5
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 8.2e-09 67.0 96 38.5
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-08 66.6 307 25.7
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.1e-08 66.6 89 38.2
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.4e-08 66.2 62 48.4
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.4e-08 66.2 62 48.4
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 2.4e-08 65.5 175 27.4
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.1e-08 64.7 316 27.5
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.1e-08 64.7 172 29.7
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 7.0e-08 63.9 151 31.1
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 9.1e-08 63.5 83 34.9
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 2.7e-07 62.0 432 21.8
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.5e-07 61.6 515 22.5
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 4.5e-07 61.2 153 26.8
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.5e-07 61.2 85 35.3
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 5.9e-07 60.8 261 26.8
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.9e-07 60.8 80 40.0
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.9e-07 60.8 80 40.0
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 1.0e-06 60.1 80 40.0
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.0e-06 60.1 80 40.0
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.0e-06 60.1 80 41.2
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.3e-06 59.7 91 33.0
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.7e-06 59.3 80 38.8
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.7e-06 59.3 270 26.7
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.2e-06 58.9 80 38.8
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 3.8e-06 58.2 89 36.0
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 8.5e-06 57.0 72 40.3
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 8.5e-06 57.0 294 21.8


User provided reference genes

Program Settings