Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 0.0e+00 1604.7 885 100.0
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 0.0e+00 1166.4 913 71.4
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 0.0e+00 1164.1 911 71.8
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 0.0e+00 1142.5 913 70.1
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 0.0e+00 1129.8 909 70.5
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 0.0e+00 1129.4 889 71.0
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 0.0e+00 1127.5 948 67.3
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 0.0e+00 1104.4 916 67.6
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 0.0e+00 1099.0 906 68.7
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 0.0e+00 1087.0 917 67.1
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 3.9e-309 1064.7 908 66.9
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 1.8e-306 1055.8 920 66.3
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.9e-284 982.6 952 60.9
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 5.3e-282 974.5 950 59.9
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 3.2e-271 938.7 948 57.9
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 9.3e-271 937.2 947 57.8
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.6e-270 936.4 948 57.3
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 8.5e-264 914.1 946 56.1
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.1e-263 913.7 949 57.6
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.2e-262 910.2 908 59.5
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 7.9e-262 907.5 958 58.5
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 3.0e-261 905.6 1002 55.2
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.7e-259 899.8 949 56.6
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.7e-259 899.8 950 56.7
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 4.8e-259 898.3 944 56.8
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 1.8e-258 896.3 906 56.8
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 8.5e-256 887.5 941 56.9
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 8.5e-256 887.5 942 56.8
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 1.1e-255 887.1 919 58.0
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 8.8e-253 877.5 956 55.9
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 3.7e-251 872.1 941 55.9
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 3.5e-249 865.5 974 55.5
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.0e-248 864.0 951 56.5
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.9e-247 859.8 939 55.1
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 2.5e-247 859.4 939 54.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 1.2e-246 857.1 915 55.8
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 8.0e-246 854.4 893 55.0
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.8e-245 853.2 926 54.6
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 4.4e-244 848.6 942 56.1
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.7e-243 846.7 947 54.8
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.7e-240 836.6 962 53.6
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 4.2e-239 832.0 932 54.7
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.7e-238 829.3 871 57.1
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.4e-237 827.0 931 54.7
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.4e-237 827.0 931 54.8
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.3e-237 826.2 927 53.8
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.2e-236 823.9 966 53.6
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.6e-236 822.8 892 54.8
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 5.7e-236 821.6 944 52.0
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 7.5e-236 821.2 1063 49.4
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 5.9e-233 811.6 934 54.1
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.2e-232 809.7 898 53.3
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 6.5e-232 808.1 915 54.0
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 6.5e-232 808.1 971 51.5
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.9e-231 806.6 914 54.6
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 4.2e-231 805.4 944 53.7
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 2.7e-230 802.7 853 56.6
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.7e-230 802.0 966 52.3
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.0e-229 800.8 939 53.9
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.0e-229 800.8 953 53.0
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 4.0e-229 798.9 858 56.2
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 6.8e-229 798.1 944 55.2
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.5e-228 797.0 944 53.3
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 2.0e-228 796.6 945 52.7
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 3.4e-228 795.8 944 51.6
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.3e-227 793.9 972 52.4
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 2.8e-227 792.7 934 50.7
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 3.7e-227 792.3 913 53.2
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 6.3e-227 791.6 951 51.9
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 6.3e-227 791.6 946 51.7
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 7.0e-226 788.1 941 52.1
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.6e-225 786.9 951 51.0
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.3e-224 783.9 943 52.0
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.7e-224 783.5 919 52.4
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.9e-223 780.0 951 51.5
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.5e-223 779.6 923 49.9
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 2.5e-223 779.6 892 52.5
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 4.2e-223 778.9 942 52.1
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 4.7e-222 775.4 929 50.7
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 4.0e-221 772.3 953 52.8
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 4.0e-221 772.3 946 53.2
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 4.4e-220 768.8 949 51.1
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 1.3e-219 767.3 937 50.2
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 8.3e-219 764.6 936 50.9
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 8.6e-216 754.6 931 50.5
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 1.1e-215 754.2 946 50.0
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 4.3e-215 752.3 917 52.1
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 3.2e-210 736.1 948 51.2
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 3.0e-208 729.6 936 49.9
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 5.2e-205 718.8 1022 47.4
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 5.2e-205 718.8 929 49.9
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.7e-203 713.8 848 50.2
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 6.0e-201 705.3 870 51.1
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.6e-185 654.1 811 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.7e-163 580.9 944 40.8
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 2.7e-161 573.5 924 41.8
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 6.2e-158 562.4 971 40.4
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 8.2e-158 562.0 447 63.8
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 8.8e-144 515.4 398 66.6
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 6.9e-141 505.8 656 49.7
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.9e-122 444.5 596 54.2
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 3.7e-118 430.3 583 49.2
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.1e-117 428.7 616 45.9
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.0e-112 412.1 904 37.4
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.0e-103 381.3 515 49.5
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 4.6e-92 343.6 598 42.3
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.3e-91 341.3 476 48.3
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.3e-83 314.7 267 60.3
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 3.1e-64 251.1 261 51.0
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.7e-62 245.4 263 48.7
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 9.3e-61 239.6 913 27.1
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.3e-58 230.7 318 50.9
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 9.6e-58 229.6 193 60.6
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 3.6e-57 227.6 328 50.0
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.4e-56 224.9 329 46.5
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.4e-54 216.9 392 44.4
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.0e-51 209.5 318 45.0
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 4.3e-50 204.1 1146 26.4
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 3.7e-49 201.1 366 41.3
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.2e-36 159.5 208 49.5
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.4e-32 146.0 742 24.9
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 3.4e-31 141.4 92 79.3
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.0e-30 139.8 92 78.3
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 5.0e-30 137.5 628 26.0
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 5.5e-29 134.0 99 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 3.6e-28 131.3 324 38.3
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 5.7e-26 124.0 308 39.9
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.4e-26 123.6 135 52.6
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.7e-25 122.5 86 74.4
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.3e-25 120.6 141 50.4
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-24 119.8 84 75.0
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.4e-24 119.4 114 53.5
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.4e-24 118.6 139 52.5
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 5.9e-23 114.0 111 53.2
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.6e-20 104.8 115 53.9
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 1.8e-16 92.4 71 67.6
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 4.1e-16 91.3 251 33.1
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.5e-15 88.2 69 68.1
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 5.0e-14 84.3 204 30.4
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.2e-13 81.3 55 74.5
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.5e-13 80.9 84 59.5
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.0e-11 75.1 58 69.0
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.5e-10 70.5 95 48.4
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 9.7e-10 70.1 58 56.9
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.2e-09 68.9 58 67.2
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.1e-08 64.7 51 66.7
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 7.0e-08 63.9 67 53.7
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.7e-06 59.3 49 67.3


User provided reference genes

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