Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 8.8e-105 383.6 196 100.0
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.6e-83 311.2 196 78.6
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 7.3e-83 310.8 196 78.6
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.4e-81 306.6 196 75.5
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.8e-81 306.2 196 76.5
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 7.5e-80 300.8 196 76.0
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 9.8e-80 300.4 196 75.0
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 2.9e-79 298.9 196 75.0
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.2e-77 293.5 196 73.5
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 3.9e-76 288.5 196 72.4
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 5.0e-76 288.1 196 72.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-75 287.0 196 71.9
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 1.1e-75 287.0 196 71.9
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 2.9e-71 272.3 196 69.9
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 7.0e-70 267.7 196 68.9
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 7.0e-70 267.7 196 68.9
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 5.6e-67 258.1 197 67.0
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 3.3e-59 232.3 196 63.3
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.2e-56 223.8 185 59.5
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 2.6e-56 222.6 189 57.7
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.7e-55 219.9 184 59.8
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.2e-55 219.5 147 72.1
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 8.4e-55 217.6 181 59.1
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.4e-54 216.9 185 58.9
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.9e-54 216.5 185 57.3
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 9.2e-54 214.2 185 58.4
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-53 213.4 185 57.3
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-53 213.4 185 57.3
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.6e-53 213.4 185 57.3
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 2.1e-53 213.0 186 57.0
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.5e-53 212.2 185 57.3
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 3.5e-53 212.2 185 56.2
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 3.5e-53 212.2 185 56.2
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 3.5e-53 212.2 185 56.2
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 6.0e-53 211.5 185 57.8
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 7.8e-53 211.1 185 55.7
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.8e-53 211.1 185 57.3
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.8e-53 211.1 185 57.3
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 2.3e-52 209.5 186 55.9
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 3.0e-52 209.1 185 57.3
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 3.9e-52 208.8 189 57.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 5.1e-52 208.4 189 56.6
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 8.7e-52 207.6 184 56.0
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.1e-51 207.2 182 57.1
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.1e-51 207.2 182 53.8
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.5e-51 206.8 185 55.7
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.5e-51 206.8 189 51.9
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.5e-51 206.8 185 55.1
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.5e-51 206.8 185 55.1
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.9e-51 206.5 182 53.8
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.9e-51 206.5 184 55.4
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.5e-51 206.1 189 54.0
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 3.3e-51 205.7 185 57.8
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 4.3e-51 205.3 185 54.1
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.2e-50 203.8 185 55.1
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.2e-50 203.8 200 53.5
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-50 203.4 177 55.4
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-50 203.4 185 54.1
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.6e-50 203.4 185 54.1
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.6e-50 202.2 185 54.1
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 4.7e-50 201.8 185 55.1
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 4.7e-50 201.8 185 55.7
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 6.2e-50 201.4 185 55.1
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 6.2e-50 201.4 187 55.1
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 8.1e-50 201.1 190 54.7
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.1e-49 200.7 182 53.8
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.1e-49 200.7 185 54.6
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.1e-49 200.7 184 54.9
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.1e-49 200.7 188 54.8
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.1e-49 200.7 175 56.0
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 1.4e-49 200.3 183 54.1
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.8e-49 199.9 187 54.5
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.8e-49 199.9 184 56.5
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 2.4e-49 199.5 182 53.8
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.0e-49 198.7 175 54.9
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 5.3e-49 198.4 182 54.9
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.3e-49 198.4 185 55.1
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 9.0e-49 197.6 175 55.4
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 9.0e-49 197.6 185 54.6
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 9.0e-49 197.6 189 52.4
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.5e-48 196.8 185 54.6
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 1.5e-48 196.8 206 50.0
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.5e-48 196.8 204 48.5
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.4e-48 195.7 185 54.6
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 3.4e-48 195.7 186 54.3
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 4.4e-48 195.3 185 53.5
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 7.6e-48 194.5 185 53.5
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 7.6e-48 194.5 182 53.3
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 9.9e-48 194.1 185 53.5
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.3e-47 193.7 177 55.9
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.2e-47 193.0 174 56.9
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 2.9e-47 192.6 185 50.3
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.9e-47 191.8 188 52.7
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 4.9e-47 191.8 191 51.3
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 8.4e-47 191.0 188 52.7
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 8.4e-47 191.0 192 52.1
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.9e-46 189.9 177 53.7
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 1.9e-46 189.9 185 50.8
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 2.4e-46 189.5 175 54.9
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 5.4e-46 188.3 182 51.6
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.2e-45 187.2 185 51.4
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.2e-45 187.2 174 54.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.2e-45 187.2 174 54.6
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.6e-45 186.8 174 55.2
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 2.1e-45 186.4 152 61.2
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.7e-45 186.0 192 51.0
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.5e-45 185.7 174 54.0
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 4.6e-45 185.3 182 50.5
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 7.8e-45 184.5 188 50.5
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 1.0e-44 184.1 185 51.4
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 5.1e-44 181.8 176 52.3
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 6.6e-44 181.4 197 50.3
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 5.6e-43 178.3 193 46.6
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.6e-42 176.8 178 48.3
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.2e-40 170.6 270 37.8
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 7.6e-40 167.9 156 53.8
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 6.4e-39 164.9 182 50.0
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 1.1e-38 164.1 153 52.3
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.4e-38 163.7 159 54.7
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 5.8e-32 141.7 205 43.9
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 4.2e-30 135.6 185 41.6
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 6.0e-29 131.7 175 45.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.2e-26 121.3 153 45.1
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.3e-23 114.0 112 55.4
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 2.2e-18 96.7 96 54.2
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 9.0e-17 91.3 73 61.6
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.9e-16 88.6 110 41.8
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 5.0e-15 85.5 119 37.8
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 1.4e-14 84.0 89 48.3
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 9.4e-14 81.3 153 35.3
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 3.6e-13 79.3 155 35.5
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.4e-12 77.4 87 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 2.3e-12 76.6 137 33.6
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.7e-11 71.2 88 39.8
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 4.8e-10 68.9 83 45.8
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.8e-09 67.0 80 42.5
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.6e-08 63.2 89 44.9
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.1e-06 57.8 81 38.3
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.1e-06 57.8 76 38.2
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.4e-06 57.4 76 38.2
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 9.4e-06 54.7 82 40.2


User provided reference genes

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