Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 9.7e-153 543.5 285 100.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 3.7e-136 488.4 285 87.4
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 3.7e-136 488.4 285 87.4
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 3.7e-136 488.4 285 87.4
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 8.2e-136 487.3 285 87.0
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 5.3e-135 484.6 285 86.7
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 9.1e-135 483.8 285 86.0
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.2e-134 483.4 285 86.7
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.6e-134 482.3 285 86.3
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 4.5e-134 481.5 285 86.3
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 5.9e-134 481.1 285 86.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 7.7e-134 480.7 285 86.3
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 7.7e-134 480.7 285 86.3
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 7.7e-134 480.7 285 86.3
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.2e-131 473.4 285 84.6
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.1e-131 472.6 285 84.6
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 6.1e-131 471.1 284 85.9
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.0e-129 466.1 277 85.2
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.5e-121 439.9 287 78.4
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 2.7e-110 402.5 287 73.5
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 4.7e-107 391.7 285 71.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.7e-107 391.7 287 70.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.0e-106 388.7 287 71.1
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 5.2e-106 388.3 285 71.2
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.5e-105 386.7 287 70.4
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.4e-105 385.6 251 79.7
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.5e-105 384.4 287 70.0
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.3e-104 383.6 286 67.8
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.7e-104 383.3 280 70.4
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.7e-104 383.3 289 69.6
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 6.4e-104 381.3 289 68.5
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.4e-103 379.4 280 70.4
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 7.0e-103 377.9 286 68.5
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.2e-102 377.1 284 69.0
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.2e-102 377.1 280 69.3
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.6e-102 376.7 280 69.6
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 4.6e-102 375.2 285 69.1
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 7.8e-102 374.4 285 69.8
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.0e-101 374.0 284 67.3
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.0e-101 374.0 286 68.9
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-101 373.6 280 68.9
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.7e-101 373.2 284 66.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.7e-101 373.2 284 67.6
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.7e-101 373.2 286 68.5
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 8.6e-101 370.9 257 73.5
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.5e-100 369.4 285 67.4
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 9.5e-100 367.5 284 66.9
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 9.5e-100 367.5 285 69.5
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.1e-99 366.3 283 67.5
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 4.7e-99 365.2 285 66.3
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.4e-98 363.6 288 67.4
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.1e-98 362.5 284 66.2
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 4.0e-98 362.1 285 66.3
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 6.8e-98 361.3 286 67.5
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-97 359.4 288 66.7
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.6e-97 359.4 285 66.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.6e-97 359.4 285 66.3
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.4e-97 358.6 290 64.5
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 5.8e-97 358.2 245 74.3
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 7.5e-97 357.8 283 65.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 9.8e-97 357.5 284 67.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.3e-96 357.1 278 66.9
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.7e-96 356.7 281 66.2
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.2e-96 356.3 282 67.0
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.2e-96 356.3 283 66.1
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.9e-96 355.1 290 63.8
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 6.4e-96 354.8 288 66.0
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.1e-95 354.0 285 65.6
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.4e-95 352.8 288 65.6
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.2e-95 352.4 289 65.7
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.2e-95 352.4 293 63.5
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 4.1e-95 352.1 280 65.7
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 7.0e-95 351.3 286 64.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 7.0e-95 351.3 288 66.7
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 7.0e-95 351.3 284 65.5
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.2e-94 350.5 282 67.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.1e-94 349.7 244 74.2
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.1e-94 349.7 283 67.8
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.7e-94 349.4 271 68.6
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.5e-94 349.0 287 64.5
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.6e-94 348.6 227 76.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 7.8e-94 347.8 288 64.6
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.3e-93 347.1 288 64.6
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.3e-93 347.1 271 68.3
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.0e-93 345.9 283 64.7
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.9e-93 345.5 289 64.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 6.6e-93 344.7 282 66.0
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 8.6e-93 344.4 277 65.7
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.1e-92 344.0 298 63.4
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.5e-92 343.6 226 73.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 2.5e-92 342.8 285 66.0
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.3e-92 342.0 282 64.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 9.5e-92 340.9 283 64.3
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.1e-91 339.7 322 58.7
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.8e-91 339.3 274 64.6
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 3.6e-91 339.0 226 72.1
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.8e-90 336.7 243 70.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 6.8e-90 334.7 289 64.4
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.2e-89 334.0 284 62.7
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 7.5e-89 331.3 278 63.7
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.7e-88 328.9 279 62.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.9e-88 328.6 216 75.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.4e-87 327.0 246 68.3
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.4e-87 326.2 278 64.0
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 4.1e-87 325.5 286 62.9
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 9.2e-87 324.3 282 61.0
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 7.8e-86 321.2 236 68.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.5e-84 317.0 293 60.1
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.1e-82 310.8 282 60.3
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 3.1e-82 309.3 228 70.2
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.0e-82 308.9 292 59.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.6e-78 297.0 283 58.0
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 7.8e-78 294.7 241 62.2
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 6.6e-77 291.6 234 63.7
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.5e-76 290.4 234 63.7
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.5e-76 289.7 286 58.7
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.5e-76 289.7 233 62.2
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 7.1e-71 271.6 215 65.6
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.2e-70 270.8 305 48.9
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 3.3e-68 262.7 295 51.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 4.3e-68 262.3 238 59.2
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.4e-66 257.3 295 47.8
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.6e-62 242.3 197 57.9
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-61 240.4 197 57.9
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.1e-61 238.8 197 56.9
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-60 237.7 197 56.9
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-56 224.2 210 59.5
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 6.4e-56 221.9 276 48.9
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.9e-50 201.8 148 64.9
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-49 201.1 197 50.8
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.7e-48 197.2 245 50.2
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.5e-48 195.3 136 68.4
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.4e-48 194.9 137 70.8
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.4e-48 194.9 211 54.0
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.6e-46 189.1 224 50.4
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.4e-39 164.9 171 54.4
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-36 156.0 178 47.8
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.0e-32 142.5 182 42.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 6.5e-32 142.1 100 72.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 6.5e-32 142.1 100 72.0
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.6e-30 136.3 118 61.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-29 134.0 199 38.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.5e-28 131.0 90 73.3
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.4e-26 124.4 194 40.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.2e-24 117.1 76 75.0
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.5e-24 115.2 206 42.2
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 1.9e-23 114.0 217 32.7
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.2e-23 112.1 190 43.2
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-17 94.4 67 64.2
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 4.5e-17 92.8 91 50.5
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-16 91.3 60 66.7
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 60 66.7
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 8.5e-16 88.6 51 78.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-15 87.8 60 65.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.8e-13 80.9 66 59.1
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.4e-12 76.6 92 47.8
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.7e-11 73.2 62 58.1
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 8.3e-11 72.0 59 64.4
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 8.3e-11 72.0 59 64.4
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 9.1e-10 68.6 61 59.0
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 2.5e-07 60.5 44 68.2
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 9.4e-07 58.5 46 63.0
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 2.1e-06 57.4 46 60.9


User provided reference genes

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