Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 4.8e-51 204.1 98 100.0
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.2e-39 164.9 88 85.2
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.0e-37 158.3 89 82.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.1e-36 156.4 92 77.2
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.0e-36 155.6 89 79.8
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.0e-36 155.6 89 79.8
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.0e-36 155.6 89 79.8
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-36 155.6 91 78.0
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-36 155.6 91 78.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.0e-36 155.6 91 78.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.0e-36 155.6 91 78.0
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 5.7e-36 154.1 89 79.8
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 5.7e-36 154.1 89 78.7
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 5.7e-36 154.1 96 78.1
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 7.4e-36 153.7 87 81.6
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 8.2e-35 150.2 86 79.1
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.8e-34 149.1 86 79.1
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.8e-34 149.1 86 79.1
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 2.4e-34 148.7 89 74.2
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.0e-33 145.6 97 71.1
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 3.4e-33 144.8 84 78.6
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 3.4e-33 144.8 84 78.6
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 4.5e-33 144.4 89 70.8
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 4.5e-33 144.4 97 70.1
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 5.9e-33 144.1 89 70.8
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 5.9e-33 144.1 88 72.7
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 7.7e-33 143.7 91 69.2
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 7.7e-33 143.7 92 69.6
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.0e-32 143.3 89 75.3
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.0e-32 143.3 88 72.7
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.3e-32 142.9 89 75.3
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.3e-32 142.9 89 75.3
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.2e-32 142.1 87 72.4
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 2.9e-32 141.7 88 71.6
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 2.9e-32 141.7 89 70.8
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.8e-32 141.4 88 72.7
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 3.8e-32 141.4 88 72.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.8e-32 141.4 88 72.7
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.0e-32 141.0 76 81.6
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 6.5e-32 140.6 81 75.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 6.5e-32 140.6 76 82.9
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.1e-31 139.8 88 71.6
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.1e-31 139.8 89 67.4
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.4e-31 139.4 89 70.8
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.9e-31 139.0 81 74.1
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.5e-31 138.7 76 78.9
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 2.5e-31 138.7 91 67.0
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 4.2e-31 137.9 89 70.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 5.5e-31 137.5 93 68.8
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 7.2e-31 137.1 92 69.6
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 7.2e-31 137.1 84 71.4
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 9.4e-31 136.7 88 68.2
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.2e-30 136.3 86 69.8
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.6e-30 136.0 90 66.7
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 1.6e-30 136.0 91 65.9
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 2.1e-30 135.6 76 76.3
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 2.7e-30 135.2 76 77.6
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.6e-30 134.8 90 67.8
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 4.7e-30 134.4 88 67.0
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.7e-30 134.4 76 75.0
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.7e-30 134.4 76 75.0
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 6.1e-30 134.0 87 69.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 7.9e-30 133.7 76 80.3
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 7.9e-30 133.7 76 76.3
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 7.9e-30 133.7 77 75.3
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 7.9e-30 133.7 81 74.1
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.4e-29 132.9 76 76.3
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-29 132.9 76 77.6
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-29 132.9 76 77.6
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-29 132.9 76 77.6
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.4e-29 132.9 76 77.6
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.4e-29 132.9 88 68.2
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.8e-29 132.5 76 77.6
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.8e-29 132.5 88 67.0
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.8e-29 132.5 89 65.2
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.8e-29 132.5 89 65.2
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 2.3e-29 132.1 76 75.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 2.3e-29 132.1 76 76.3
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 3.0e-29 131.7 80 73.8
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 3.9e-29 131.3 76 76.3
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.9e-29 131.3 90 65.6
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 3.9e-29 131.3 77 76.6
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 5.1e-29 131.0 87 67.8
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 6.7e-29 130.6 76 76.3
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 6.7e-29 130.6 76 75.0
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.8e-29 130.2 76 76.3
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 8.8e-29 130.2 76 76.3
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 8.8e-29 130.2 76 72.4
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 8.8e-29 130.2 76 76.3
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 8.8e-29 130.2 88 70.5
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.1e-28 129.8 76 76.3
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.1e-28 129.8 76 76.3
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.1e-28 129.8 76 73.7
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.5e-28 129.4 76 75.0
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 2.0e-28 129.0 76 75.0
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 2.0e-28 129.0 76 75.0
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 2.6e-28 128.6 89 64.0
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 3.3e-28 128.3 76 73.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 4.4e-28 127.9 89 66.3
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.3e-27 126.3 76 72.4
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.8e-27 125.2 76 72.4
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.8e-27 125.2 76 72.4
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 1.1e-26 123.2 77 71.4
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.8e-26 122.5 70 78.6
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.8e-26 122.5 114 52.6
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.1e-26 121.7 107 54.2
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 7.7e-25 117.1 77 62.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.2e-24 115.5 64 75.0
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.1e-23 113.2 74 67.6
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 1.1e-23 113.2 63 79.4
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.1e-23 113.2 79 64.6
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.5e-23 112.1 69 73.9
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 4.2e-23 111.3 66 68.2
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 5.5e-23 110.9 64 70.3
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.2e-22 109.8 63 73.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.1e-22 109.0 63 74.6
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 4.7e-22 107.8 63 73.0
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 6.1e-22 107.5 66 69.7
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.3e-21 105.5 79 62.0
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 8.8e-21 103.6 63 69.8
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.3e-19 99.8 79 57.0
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 2.2e-19 99.0 62 66.1
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 6.3e-19 97.4 52 76.9
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 8.2e-19 97.1 88 54.5
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.0e-17 92.4 59 72.9
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.0e-16 90.1 57 68.4
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 6.5e-16 87.4 66 60.6
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.9e-15 85.9 76 53.9
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 2.5e-15 85.5 83 48.2
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 3.6e-14 81.6 58 65.5
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 4.7e-14 81.3 53 71.7
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.8e-11 72.0 76 48.7
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.8e-11 71.2 46 67.4
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 6.3e-11 70.9 46 67.4
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 2.7e-09 65.5 29 89.7
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 8.0e-06 53.9 47 46.8


User provided reference genes

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