Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 8.0e-70 267.3 171 100.0
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.5e-36 156.8 176 51.7
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.4e-36 155.2 179 55.3
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-34 150.2 185 51.9
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.4e-34 150.2 186 51.6
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.4e-34 150.2 178 54.5
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-34 149.8 185 51.4
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-34 149.4 185 51.4
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-34 149.4 185 51.4
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 3.5e-33 145.6 180 52.2
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 3.5e-33 145.6 180 52.2
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 3.5e-33 145.6 180 52.2
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-32 144.1 177 52.0
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-32 144.1 182 49.5
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 1.0e-32 144.1 177 52.0
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 6.6e-32 141.4 180 56.7
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.1e-31 140.6 184 56.0
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-31 139.8 182 48.9
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.9e-31 139.8 182 48.9
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.9e-31 139.8 182 48.9
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.9e-31 139.8 182 48.9
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 9.6e-31 137.5 181 52.5
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 9.6e-31 137.5 181 52.5
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.3e-30 137.1 185 48.1
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-30 137.1 180 57.2
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.3e-30 137.1 180 57.2
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.8e-30 135.2 203 52.7
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 6.2e-30 134.8 146 63.7
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 6.2e-30 134.8 181 51.4
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 6.2e-30 134.8 180 56.7
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 6.2e-30 134.8 180 56.7
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 8.1e-30 134.4 184 48.4
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 8.1e-30 134.4 184 48.4
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-29 133.3 144 54.9
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-29 132.5 184 48.4
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 6.9e-29 131.3 177 57.6
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.5e-28 128.6 196 58.2
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 5.4e-26 121.7 179 57.0
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.5e-25 119.0 179 57.5
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.6e-25 118.6 78 79.5
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.1e-23 114.0 123 65.9
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 9.0e-21 104.4 82 76.8
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.0e-19 100.9 154 48.7
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-19 99.8 164 43.3
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.8e-19 99.0 165 42.4
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.9e-19 98.6 121 60.3
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 4.9e-19 98.6 192 39.6
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.9e-19 98.6 151 44.4
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 6.5e-19 98.2 175 45.7
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.4e-18 97.1 162 46.9
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 4.2e-18 95.5 134 53.7
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.2e-18 95.5 159 42.1
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 7.1e-18 94.7 160 41.9
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 7.1e-18 94.7 162 42.6
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.2e-17 94.0 146 46.6
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.2e-17 94.0 159 41.5
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.6e-17 93.6 143 46.9
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.6e-17 93.6 170 48.2
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.1e-17 93.2 161 44.7
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.7e-17 92.8 156 42.9
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.7e-17 92.8 163 40.5
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.7e-17 92.8 163 40.5
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 3.5e-17 92.4 160 45.0
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 4.6e-17 92.0 140 43.6
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 4.6e-17 92.0 167 41.3
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 4.6e-17 92.0 155 40.6
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 6.0e-17 91.7 149 43.0
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 7.9e-17 91.3 153 45.1
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.3e-16 90.5 200 39.0
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.3e-16 90.5 174 38.5
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.0e-16 89.4 151 49.7
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 5.1e-16 88.6 148 43.2
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.7e-16 88.2 165 40.0
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 6.7e-16 88.2 155 43.2
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.1e-15 87.4 154 46.1
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.1e-15 87.4 160 39.4
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 1.5e-15 87.0 159 40.9
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.5e-15 87.0 151 43.0
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.5e-15 87.0 155 42.6
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 1.5e-15 87.0 164 40.9
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 2.5e-15 86.3 132 44.7
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.5e-15 86.3 155 45.8
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.5e-15 86.3 148 50.7
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 3.3e-15 85.9 164 47.6
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 4.3e-15 85.5 147 38.1
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 4.3e-15 85.5 149 40.9
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 5.7e-15 85.1 182 42.3
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 5.7e-15 85.1 143 43.4
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 5.7e-15 85.1 169 37.3
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 1.3e-14 84.0 155 41.3
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.3e-14 84.0 141 45.4
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.6e-14 83.6 160 40.0
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.6e-14 83.6 155 47.7
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 1.6e-14 83.6 149 39.6
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.1e-14 83.2 165 40.0
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 2.8e-14 82.8 161 38.5
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 3.7e-14 82.4 139 43.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 4.8e-14 82.0 148 40.5
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.8e-14 82.0 159 46.5
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.8e-14 82.0 182 40.7
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 8.2e-14 81.3 142 43.0
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 3.1e-13 79.3 135 41.5
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 4.1e-13 79.0 156 45.5
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 4.1e-13 79.0 154 46.8
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 4.1e-13 79.0 153 39.9
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 6.9e-13 78.2 174 36.2
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 9.0e-13 77.8 151 39.7
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 9.0e-13 77.8 178 36.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 9.0e-13 77.8 178 36.5
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.2e-12 77.4 74 56.8
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.2e-12 77.4 123 43.1
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.5e-12 77.0 153 40.5
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 2.0e-12 76.6 165 37.6
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 2.0e-12 76.6 158 38.0
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 2.0e-12 76.6 165 38.8
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 2.0e-12 76.6 149 35.6
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.6e-12 76.3 182 36.8
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 2.6e-12 76.3 141 39.7
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 4.5e-12 75.5 77 54.5
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 5.8e-12 75.1 77 54.5
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 5.8e-12 75.1 142 41.5
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 5.8e-12 75.1 161 36.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 7.6e-12 74.7 144 48.6
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.0e-11 74.3 77 53.2
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.3e-11 73.9 164 36.6
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 2.2e-11 73.2 139 43.2
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.9e-11 72.8 160 39.4
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 5.0e-11 72.0 141 39.0
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.0e-11 72.0 145 44.1
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 6.5e-11 71.6 75 57.3
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.9e-10 70.1 153 37.9
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.9e-10 70.1 76 52.6
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.9e-10 70.1 140 44.3
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 3.2e-10 69.3 86 50.0
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 9.3e-10 67.8 174 39.1
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 9.3e-10 67.8 180 41.7
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.7e-09 66.2 76 52.6
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.1e-09 65.1 151 42.4
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 7.9e-09 64.7 149 40.9
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.3e-08 63.2 79 48.1
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 2.3e-08 63.2 86 48.8
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 3.0e-08 62.8 80 48.8


User provided reference genes

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