Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 3.8e-279 964.1 472 100.0
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.8e-220 769.2 467 79.9
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 8.9e-220 766.9 468 79.3
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.2e-219 766.5 468 79.3
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.0e-219 765.8 467 79.0
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-217 758.8 469 79.1
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.2e-217 758.4 469 79.7
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 4.6e-216 754.6 469 78.0
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 6.0e-216 754.2 469 78.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-215 753.1 469 78.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-215 753.1 469 78.0
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.3e-214 748.4 469 78.0
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 5.6e-214 747.7 471 78.3
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-211 738.8 468 76.5
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 6.4e-210 734.2 468 76.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 8.4e-210 733.8 468 76.3
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.0e-208 727.6 467 76.9
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-197 693.0 468 73.9
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-188 661.0 442 73.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.4e-187 658.7 467 67.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 9.3e-185 650.6 468 69.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-183 644.8 468 69.2
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.3e-182 642.1 445 71.7
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 9.6e-182 640.6 468 66.2
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 9.6e-182 640.6 468 66.5
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.3e-181 640.2 469 66.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.8e-181 639.0 468 66.2
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-180 637.1 468 66.0
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.4e-179 632.1 467 66.8
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.2e-178 629.4 468 65.6
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 8.4e-178 627.5 460 66.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 8.4e-178 627.5 467 64.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 7.1e-177 624.4 467 64.9
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.0e-176 621.3 463 65.2
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 6.0e-176 621.3 460 65.2
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.0e-175 620.5 468 65.6
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 2.3e-175 619.4 459 64.7
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.1e-174 617.1 458 65.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 3.3e-174 615.5 460 65.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 5.7e-174 614.8 460 63.9
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 4.8e-173 611.7 464 63.6
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 6.3e-173 611.3 488 62.7
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 5.3e-172 608.2 442 65.8
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 5.3e-172 608.2 458 65.1
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.5e-171 606.7 460 63.5
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.0e-171 606.3 460 63.5
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.5e-171 605.1 460 63.3
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 7.6e-171 604.4 466 62.7
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.5e-170 600.9 460 63.0
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.5e-169 599.4 467 62.3
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 3.2e-169 599.0 444 65.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.2e-168 597.0 467 61.2
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.6e-168 595.5 459 63.8
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 6.1e-168 594.7 437 64.5
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-168 594.3 438 65.1
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 7.9e-168 594.3 458 62.9
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.0e-167 594.0 467 62.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.4e-167 593.6 468 61.8
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.3e-167 592.8 467 62.1
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 3.9e-167 592.0 387 74.9
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 5.1e-167 591.7 468 62.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.1e-166 590.5 466 61.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 7.4e-166 587.8 459 61.2
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 9.7e-166 587.4 491 60.9
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 4.8e-165 585.1 469 60.8
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.1e-164 583.9 468 60.9
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.4e-164 583.6 464 60.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.4e-164 582.8 468 60.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 4.1e-164 582.0 461 61.0
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 6.9e-164 581.3 468 60.5
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.1e-164 580.9 464 60.1
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.2e-163 580.5 460 59.3
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.5e-163 580.1 468 60.5
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.6e-163 579.3 437 64.3
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 5.9e-163 578.2 467 60.4
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 5.9e-163 578.2 468 59.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 5.0e-162 575.1 459 62.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 5.0e-162 575.1 460 61.1
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 5.0e-162 575.1 458 59.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.1e-161 573.9 459 59.7
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.1e-161 573.9 468 59.6
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.2e-161 572.4 461 59.7
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 4.2e-161 572.0 468 59.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 5.5e-161 571.6 409 67.5
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 7.2e-161 571.2 446 66.6
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 7.2e-161 571.2 468 59.6
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.6e-160 570.1 469 61.0
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.6e-160 570.1 461 59.7
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.1e-160 569.7 459 61.4
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.0e-159 567.4 474 58.4
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.8e-159 566.6 468 59.0
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 5.1e-159 565.1 468 59.0
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 8.8e-159 564.3 460 58.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.5e-158 563.5 459 60.1
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.4e-156 556.2 460 59.1
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 5.9e-155 551.6 441 60.5
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 3.2e-153 545.8 432 61.1
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 5.5e-153 545.0 414 62.1
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.6e-150 536.2 461 57.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.4e-150 535.4 462 56.3
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 4.4e-150 535.4 466 56.0
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.2e-149 533.1 467 56.7
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.1e-148 529.3 459 56.4
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 7.7e-147 524.6 449 57.0
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.2e-143 511.9 467 52.7
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.3e-141 507.3 439 55.4
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.1e-140 502.7 366 66.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.6e-139 500.4 460 53.5
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.7e-139 499.6 459 52.5
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 4.2e-137 492.3 466 52.6
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 9.4e-137 491.1 491 52.1
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.6e-136 490.3 470 53.6
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.6e-136 489.2 436 56.9
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.6e-131 473.8 467 54.4
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.2e-128 464.2 479 52.4
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.2e-126 457.6 351 61.3
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 2.6e-126 456.4 343 65.0
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.4e-124 450.7 419 53.2
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 8.9e-119 431.4 504 46.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 8.6e-114 414.8 429 51.3
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.9e-108 397.1 502 45.2
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.1e-104 383.6 462 44.6
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.5e-91 339.7 225 75.6
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 6.6e-90 335.5 417 43.6
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 3.2e-84 316.6 425 41.4
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 9.6e-73 278.5 254 55.9
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-68 264.6 264 50.8
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-68 264.6 315 50.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.5e-65 254.6 189 65.1
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 7.4e-65 252.3 192 65.1
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.3e-64 251.5 192 65.1
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-60 238.0 225 56.0
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.8e-58 231.1 196 59.2
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 8.7e-58 228.8 222 54.5
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 9.0e-55 218.8 384 38.5
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.2e-53 214.2 148 64.9
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 5.9e-38 162.9 155 52.3
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-37 162.2 144 63.2
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-37 161.8 178 51.1
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-37 160.2 144 61.8
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 3.6e-35 153.7 110 63.6
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 6.1e-35 152.9 215 45.1
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 9.7e-33 145.6 117 64.1
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.7e-32 143.7 117 65.0
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-31 141.0 132 56.1
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 7.0e-31 139.4 76 75.0
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 5.9e-30 136.3 102 67.6
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.3e-29 135.2 106 65.1
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-29 133.7 215 40.5
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-29 132.5 76 78.9
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-28 129.8 76 77.6
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 4.8e-24 116.7 80 70.0
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-23 115.5 219 39.3
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.4e-23 114.4 97 57.7
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 2.9e-21 107.5 85 63.5
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.5e-21 106.3 56 83.9
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-20 103.6 106 49.1
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 1.2e-19 102.1 92 58.7
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-18 97.8 57 68.4
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-17 95.5 100 49.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.8e-16 90.1 56 67.9
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.6e-14 85.1 121 39.7
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.0e-14 84.7 78 51.3
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.5e-12 78.6 183 29.5
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.9e-12 78.2 177 29.9
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.4e-10 72.0 177 29.4
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 8.9e-10 69.3 49 69.4
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 1.5e-09 68.6 56 64.3
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 2.6e-09 67.8 46 73.9
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 5.7e-09 66.6 120 41.7
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 1.3e-08 65.5 193 27.5
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 4.9e-08 63.5 40 75.0
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-07 61.6 53 54.7
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 2.4e-07 61.2 53 52.8
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 9.2e-07 59.3 40 65.0
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.2e-07 59.3 63 46.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.2e-07 59.3 63 46.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.0e-06 58.2 63 46.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-06 57.0 171 26.9


User provided reference genes

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