Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.8e-102 375.9 190 100.0
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-93 346.7 192 91.1
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.9e-90 334.3 191 89.5
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.0e-89 333.6 190 88.4
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 6.6e-89 330.9 186 89.2
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.6e-87 326.2 190 88.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 6.8e-86 320.9 193 85.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 8.9e-86 320.5 194 85.6
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.5e-85 319.7 190 84.7
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 7.5e-85 317.4 190 85.3
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.7e-84 316.2 194 84.5
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 3.7e-84 315.1 190 83.2
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 3.7e-84 315.1 190 83.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 6.6e-81 304.3 188 78.2
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.3e-80 302.0 188 78.2
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 9.5e-80 300.4 181 85.6
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.1e-79 299.3 181 85.1
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.1e-67 258.5 153 88.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-63 246.1 191 70.7
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.9e-59 233.0 179 68.2
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-53 213.8 123 87.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 7.6e-53 211.1 191 60.2
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 9.9e-53 210.7 190 58.4
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 4.2e-51 205.3 177 59.3
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.2e-51 205.3 189 56.1
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 5.4e-51 204.9 172 60.5
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 7.1e-51 204.5 173 59.5
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.7e-50 202.6 184 56.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.0e-49 200.7 172 58.1
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.3e-49 199.5 173 59.0
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.3e-49 199.5 193 56.5
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 3.0e-49 199.1 173 57.2
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.6e-49 198.0 176 57.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 6.6e-49 198.0 170 58.2
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 8.7e-49 197.6 174 59.2
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.1e-48 197.2 177 57.6
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.5e-48 196.8 182 56.0
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.3e-48 195.7 190 54.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.3e-48 195.7 172 57.6
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 4.3e-48 195.3 171 58.5
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 4.3e-48 195.3 163 61.3
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 7.3e-48 194.5 169 56.2
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 9.6e-48 194.1 174 56.3
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.3e-47 193.7 173 56.6
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.1e-47 193.0 171 59.1
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.1e-47 193.0 171 58.5
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.1e-47 193.0 177 55.4
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.1e-47 193.0 175 57.7
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.8e-47 192.6 172 57.0
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.8e-47 192.6 170 55.3
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 3.6e-47 192.2 176 56.8
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 4.8e-47 191.8 171 57.9
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 6.2e-47 191.4 168 57.7
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 8.1e-47 191.0 171 56.1
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.1e-46 190.7 169 56.8
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.1e-46 190.7 174 55.7
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.4e-46 190.3 172 56.4
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.8e-46 189.9 164 59.1
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.4e-46 189.5 183 54.6
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.0e-46 188.7 172 57.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.3e-46 188.3 174 54.6
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.2e-45 187.2 169 57.4
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.5e-45 186.8 176 55.1
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.5e-45 186.8 174 54.6
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.5e-45 186.8 171 56.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 2.6e-45 186.0 175 56.6
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.8e-45 184.9 188 55.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.3e-44 183.7 169 55.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.3e-44 183.7 169 55.0
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.7e-44 183.3 175 54.3
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.7e-44 183.3 173 52.6
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.2e-44 183.0 183 53.6
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.9e-44 182.6 162 58.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.9e-44 182.6 184 54.9
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 4.9e-44 181.8 169 53.3
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 6.4e-44 181.4 179 54.2
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.1e-43 180.6 172 52.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.1e-43 180.6 169 52.7
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.4e-43 180.3 172 53.5
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 2.4e-43 179.5 171 52.6
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.2e-43 179.1 164 55.5
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-42 176.4 168 52.4
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.1e-42 176.4 203 48.3
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-42 176.0 179 51.4
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-42 176.0 171 56.1
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 4.6e-42 175.3 171 55.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 6.0e-42 174.9 167 54.5
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.0e-41 174.1 169 52.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.0e-41 172.6 171 55.0
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-40 170.6 168 51.8
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.1e-40 170.6 171 54.4
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.1e-40 170.6 209 45.5
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 2.5e-40 169.5 204 47.5
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.5e-40 169.5 171 54.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.3e-40 168.7 186 50.0
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 5.6e-40 168.3 189 50.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 5.6e-40 168.3 147 59.2
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 9.6e-40 167.5 235 43.0
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-39 166.8 188 50.0
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.8e-39 166.0 174 52.9
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.7e-39 165.6 161 52.2
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-38 164.1 188 50.0
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 2.4e-38 162.9 188 49.5
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.4e-38 162.9 133 61.7
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 5.3e-38 161.8 125 66.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-37 160.2 159 50.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 4.5e-37 158.7 125 63.2
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 5.8e-37 158.3 183 51.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.3e-36 157.1 144 59.0
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.3e-36 157.1 191 47.6
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.7e-36 156.8 168 52.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.7e-36 156.8 170 51.8
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 6.0e-34 148.3 169 49.1
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 6.0e-34 148.3 122 62.3
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.3e-33 146.4 172 44.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 5.1e-33 145.2 109 67.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.9e-32 143.3 169 46.2
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.3e-32 142.5 169 46.2
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 7.4e-32 141.4 164 47.6
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 4.5e-29 132.1 141 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 5.9e-29 131.7 159 43.4
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.0e-28 128.6 186 41.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 5.5e-27 125.2 124 52.4
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.6e-26 123.6 122 51.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.7e-25 118.2 118 53.4
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-24 116.3 119 50.4
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 3.3e-24 115.9 131 48.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 4.3e-24 115.5 141 44.7
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 5.7e-24 115.2 157 43.9
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.3e-23 114.0 133 44.4
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 4.1e-22 109.0 122 48.4
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.3e-22 108.6 125 46.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 6.5e-20 101.7 156 41.0
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 4.2e-19 99.0 179 34.1
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 1.4e-17 94.0 121 41.3
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.0e-17 92.8 83 56.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.5e-16 90.5 172 36.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.2e-11 72.8 50 68.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.2e-11 72.8 50 68.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 7.2e-11 71.6 94 38.3
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 9.4e-11 71.2 54 63.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.1e-10 70.1 50 66.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.1e-10 70.1 60 56.7
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 7.9e-10 68.2 60 55.0
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-09 66.6 53 60.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 3.9e-09 65.9 124 38.7
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.1e-06 57.8 41 63.4


User provided reference genes

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