Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 3152.5 1603 100.0
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2738.8 1626 86.7
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2722.6 1630 86.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2719.5 1621 86.4
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2688.3 1627 85.4
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2687.9 1629 85.6
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2644.0 1629 84.1
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2619.7 1622 83.0
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2597.4 1624 82.3
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2579.3 1623 82.3
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2562.3 1611 82.2
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2561.9 1632 81.6
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2560.0 1632 81.6
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2559.3 1610 82.2
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2546.5 1628 81.3
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2532.3 1629 80.8
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2529.2 1627 80.5
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2517.3 1633 79.9
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2516.5 1631 80.3
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2451.0 1617 77.7
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2426.7 1621 77.1
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2417.5 1627 75.5
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2412.5 1623 76.2
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2403.2 1623 75.7
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2390.5 1627 75.0
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2388.6 1627 75.5
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2371.3 1629 74.8
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2356.6 1628 74.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2355.1 1623 74.2
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2352.0 1623 74.1
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2350.9 1626 73.9
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2340.8 1639 73.3
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2335.5 1631 73.3
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2330.4 1638 73.0
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2325.4 1625 73.1
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2322.4 1626 73.1
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2320.4 1623 73.1
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2314.3 1623 73.0
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2312.0 1627 75.1
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2306.6 1630 72.7
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2301.6 1620 72.2
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2298.5 1630 72.0
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2298.1 1604 72.8
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2297.7 1627 72.0
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2293.8 1594 73.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2289.2 1631 71.9
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2273.4 1648 70.6
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2265.7 1628 71.3
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2264.6 1633 71.0
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2260.3 1657 70.4
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2257.6 1626 71.3
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2256.1 1537 75.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2250.7 1611 71.5
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2244.2 1621 72.1
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2234.1 1617 71.1
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2230.3 1632 70.5
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2230.3 1621 71.4
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2224.1 1621 71.4
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2211.0 1526 74.3
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2203.3 1620 69.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2194.9 1655 67.6
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2183.7 1626 69.2
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2182.1 1609 68.7
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2181.4 1933 61.5
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2179.8 1610 69.3
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2179.1 1450 77.0
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2177.9 1613 70.1
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2176.7 1602 68.7
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2173.7 1615 68.6
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2170.6 1611 68.8
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2170.2 1617 68.4
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2155.6 1621 67.3
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2153.3 1639 68.4
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2147.5 1622 66.8
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2144.8 1619 67.9
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2140.2 1650 67.8
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2105.1 1624 66.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2091.6 1524 70.4
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2083.9 1614 67.0
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2083.5 1457 75.2
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2083.5 1431 73.8
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2025.8 1966 56.4
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1991.5 1605 64.4
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1983.8 1573 65.5
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1974.5 1389 73.9
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1972.2 1604 63.9
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1959.1 1473 68.4
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1939.1 1623 63.0
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1929.8 1626 61.5
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1901.3 1626 61.7
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1882.1 1198 79.5
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1829.3 1617 60.0
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1803.5 1607 58.9
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1689.5 1565 59.1
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1638.6 1110 74.2
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1604.7 1215 67.7
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1525.4 1412 58.7
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1466.1 1370 58.2
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1463.7 979 74.3
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1436.4 975 73.9
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1352.0 1654 46.9
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1317.0 1218 56.2
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1295.4 1652 45.3
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1238.8 1611 43.9
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1199.5 1075 58.0
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1157.5 738 78.6
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1113.6 1601 44.0
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.2e-263 914.4 650 73.8
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.3e-251 873.6 522 86.8
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 7.9e-244 848.6 607 72.0
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 4.1e-232 809.7 535 75.9
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 7.7e-231 805.4 573 73.5
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 3.9e-227 793.1 663 63.2
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.0e-215 754.2 631 63.1
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.0e-208 729.2 503 71.8
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.2e-200 702.2 603 62.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-198 698.0 610 61.5
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 5.4e-168 596.7 498 64.7
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 7.1e-168 596.3 494 64.6
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 2.0e-162 578.2 652 50.9
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.1e-160 572.4 552 56.7
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.6e-159 568.5 486 61.7
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.9e-157 561.6 421 71.5
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-152 545.8 332 80.1
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.6e-151 542.0 504 59.3
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 2.4e-147 528.1 369 74.0
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 8.4e-145 519.6 329 81.2
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.5e-130 472.2 493 51.7
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.8e-124 450.7 312 73.1
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.4e-123 448.4 290 77.9
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.8e-113 414.5 401 54.1
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 5.5e-112 410.6 318 66.4
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.1e-109 402.9 369 56.4
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.1e-107 393.3 314 65.3
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.0e-105 389.8 380 56.3
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 4.7e-95 354.4 248 71.8
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.2e-87 329.7 258 65.5
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-74 286.2 216 69.0
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 1.9e-64 252.7 155 76.8
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 6.2e-63 247.7 152 77.6
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.2e-55 223.4 142 74.6
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.4e-51 209.9 142 68.3
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 2.7e-50 205.7 146 71.2
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.3e-48 198.7 217 51.6
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 5.2e-46 191.4 121 78.5
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 7.1e-43 181.0 129 72.9
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-33 150.6 143 59.4
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-33 150.6 143 59.4
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-33 150.6 143 59.4
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-33 150.6 143 59.4
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-33 150.6 143 59.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.0e-33 150.6 141 55.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-33 150.2 143 58.7
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.7e-33 147.5 143 58.7
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.9e-32 146.4 143 58.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.4e-32 144.4 94 71.3
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.3e-31 143.7 93 73.1
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 5.3e-30 138.3 94 69.1
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 3.4e-29 135.6 85 72.9
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.4e-27 130.2 84 71.4
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 4.6e-26 125.2 96 66.7
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-25 123.6 130 55.4
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.9e-25 122.1 130 54.6
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.2e-20 106.3 91 60.4
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 3.8e-20 105.5 91 59.3
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 9.3e-19 100.9 107 57.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 5.1e-17 95.1 73 63.0
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 4.3e-16 92.0 51 78.4
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.8e-15 89.4 82 57.3
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-13 83.6 56 69.6
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.5e-13 83.6 55 69.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.9e-12 79.3 54 68.5
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 5.0e-12 78.6 54 72.2
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 1.5e-08 67.0 146 37.7
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 4.3e-08 65.5 50 64.0
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 8.2e-07 61.2 43 62.8
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 1.8e-06 60.1 38 65.8
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 5.3e-06 58.5 59 49.2


User provided reference genes

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