Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.2e-148 528.9 260 100.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.0e-125 452.6 260 86.2
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.0e-124 450.3 260 85.0
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.2e-122 443.4 260 85.8
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.6e-122 443.0 260 85.4
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 4.0e-121 438.3 260 83.5
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.2e-120 436.8 261 83.5
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.9e-119 431.4 261 84.3
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 6.6e-116 421.0 284 76.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 6.6e-116 421.0 253 83.8
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 6.6e-116 421.0 284 76.8
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 6.6e-116 421.0 253 83.8
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.5e-115 419.9 253 83.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.9e-115 419.5 260 80.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 2.5e-115 419.1 260 80.4
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.3e-115 418.7 260 80.8
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.6e-115 417.9 260 80.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 9.5e-115 417.2 260 80.0
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.1e-114 416.0 260 80.0
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 2.1e-114 416.0 260 80.0
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 2.1e-114 416.0 260 80.0
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.8e-114 415.6 260 80.0
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.8e-114 415.6 258 78.7
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 4.7e-114 414.8 260 79.6
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.1e-113 413.7 260 80.0
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.8e-113 411.0 260 76.9
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.6e-106 389.8 259 72.6
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.2e-106 387.9 261 73.9
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.2e-104 383.6 258 72.1
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.7e-103 379.8 260 70.8
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.7e-103 379.8 261 71.3
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.7e-103 379.8 261 71.6
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.2e-103 379.4 260 72.7
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.9e-103 378.3 261 71.3
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 4.9e-103 378.3 301 66.8
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 8.4e-103 377.5 260 70.4
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 8.4e-103 377.5 262 71.8
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.9e-102 376.3 256 71.5
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 2.4e-102 375.9 261 71.3
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 3.2e-102 375.6 261 71.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.2e-102 375.6 261 72.0
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 3.2e-102 375.6 261 72.0
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.2e-101 373.6 259 70.7
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.6e-101 373.2 260 69.2
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 3.5e-101 372.1 261 71.3
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.5e-101 372.1 261 70.5
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 6.0e-101 371.3 261 70.9
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 6.0e-101 371.3 259 70.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 6.0e-101 371.3 258 71.3
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 7.8e-101 370.9 261 70.1
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.3e-100 370.2 259 68.7
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.3e-100 370.2 261 69.7
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.7e-100 369.8 261 70.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.1e-100 368.2 261 71.3
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 5.1e-100 368.2 261 70.9
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 8.7e-100 367.5 260 68.8
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.5e-99 366.7 261 71.3
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.5e-99 366.7 261 71.3
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.5e-99 366.7 261 70.9
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.5e-99 365.9 261 70.9
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 3.3e-99 365.5 260 68.5
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.3e-99 365.5 251 70.1
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 4.3e-99 365.2 261 70.1
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 4.3e-99 365.2 254 70.9
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 7.3e-99 364.4 260 68.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 7.3e-99 364.4 260 69.2
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 9.6e-99 364.0 261 68.6
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 9.6e-99 364.0 263 67.7
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.6e-98 363.2 263 67.7
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 3.6e-98 362.1 254 70.1
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 4.8e-98 361.7 261 69.0
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 6.2e-98 361.3 262 68.3
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.2e-98 361.3 262 68.3
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 8.1e-98 360.9 260 68.5
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 8.1e-98 360.9 261 68.6
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.4e-97 360.1 263 68.1
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.4e-97 360.1 261 67.4
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.4e-97 360.1 263 66.9
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.8e-97 359.8 260 68.8
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.1e-97 359.0 259 68.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 3.1e-97 359.0 261 68.2
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 4.0e-97 358.6 263 66.9
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 4.0e-97 358.6 258 67.4
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.0e-97 358.6 260 68.8
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 5.3e-97 358.2 254 69.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 6.9e-97 357.8 260 69.6
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 6.9e-97 357.8 263 66.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.9e-97 357.8 260 68.8
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 9.0e-97 357.5 262 68.7
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.2e-96 357.1 260 67.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.0e-96 356.3 263 67.3
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.6e-96 355.9 261 68.2
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.5e-96 355.1 263 66.5
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 9.9e-96 354.0 261 68.2
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-95 353.6 251 68.1
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-95 353.6 251 68.1
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.9e-95 352.4 263 66.2
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 6.4e-95 351.3 251 67.7
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 5.4e-94 348.2 263 66.2
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.7e-93 345.9 259 66.4
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 4.6e-93 345.1 261 67.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 6.0e-93 344.7 260 64.6
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 3.9e-92 342.0 256 66.0
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.9e-92 342.0 254 65.0
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.1e-91 340.5 261 64.0
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.1e-91 340.5 255 65.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.3e-91 338.6 262 65.6
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 5.6e-91 338.2 261 64.0
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 9.6e-91 337.4 261 63.6
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.6e-91 337.4 253 65.2
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.1e-90 336.3 253 65.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 6.2e-90 334.7 303 57.4
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 8.1e-90 334.3 261 65.1
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 9.0e-89 330.9 260 64.6
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.6e-88 329.3 261 65.1
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.6e-88 329.3 262 62.2
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.9e-87 325.9 256 62.9
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 8.4e-87 324.3 208 77.4
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.7e-85 319.3 236 66.5
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 3.9e-84 315.5 261 62.1
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.5e-83 312.8 252 61.5
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 6.2e-82 308.1 195 76.4
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.1e-81 305.8 268 57.8
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 4.0e-81 305.4 261 61.7
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 9.0e-81 304.3 251 61.8
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.4e-78 297.0 199 75.4
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.7e-77 292.7 257 59.9
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 4.6e-77 292.0 258 60.1
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 4.3e-75 285.4 186 73.1
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.0e-71 274.2 260 57.7
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 8.2e-66 254.6 164 74.4
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.1e-65 252.7 162 77.2
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 6.9e-65 251.5 158 78.5
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 5.0e-63 245.4 196 63.3
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 2.3e-60 236.5 203 54.7
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.9e-60 235.7 189 64.0
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 3.8e-55 219.2 190 63.7
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 3.8e-55 219.2 190 63.7
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 5.0e-55 218.8 191 56.0
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.2e-48 197.6 186 56.5
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.2e-48 197.6 188 54.8
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.2e-42 176.8 183 46.4
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.7e-40 169.9 88 92.0
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.3e-39 167.5 121 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 3.7e-34 149.4 143 52.4
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 5.2e-28 129.0 86 75.6
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.3e-26 124.4 63 85.7
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.7e-26 122.9 75 77.3
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.2e-24 117.9 185 35.1
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 5.0e-23 112.5 110 56.4
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 5.0e-23 112.5 110 56.4
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.5e-22 110.9 110 59.1
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 3.4e-19 99.8 86 66.3
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 4.9e-18 95.9 179 33.5
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 3.9e-15 86.3 94 56.4
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-12 77.4 94 50.0
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.7e-10 69.7 52 61.5
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 6.4e-10 68.9 237 27.4
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 7.8e-08 62.0 46 65.2
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 3.0e-07 60.1 54 57.4
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 3.0e-07 60.1 34 79.4
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.5e-06 57.8 45 57.8


User provided reference genes

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