Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 2295.0 1171 100.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 2123.2 1173 92.7
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 2115.5 1172 92.5
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 2115.1 1173 92.8
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 2108.2 1173 92.4
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 2107.0 1173 91.8
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 2096.2 1175 91.7
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 2022.3 1179 89.5
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 2013.4 1179 89.2
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1877.1 1170 83.8
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1744.6 1174 77.8
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1738.8 1173 77.4
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1736.5 1174 77.5
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1736.5 1174 77.5
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1735.7 1172 77.1
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1172 77.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1721.1 1174 76.8
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1720.7 1171 77.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1719.5 1173 76.7
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1714.9 1178 76.5
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1714.1 1183 76.2
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1713.0 1184 76.3
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1712.2 1174 76.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1711.0 1174 76.7
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1710.7 1173 76.0
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1710.7 1175 76.4
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1707.6 1174 76.7
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1706.0 1173 75.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1218 74.1
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1176 74.6
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1222 74.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1172 75.6
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1698.7 1173 75.8
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1697.6 1174 76.0
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1696.4 1222 73.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1693.7 1170 76.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1693.7 1222 73.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1692.9 1172 75.2
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1691.4 1173 75.3
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1194 74.5
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1176 75.9
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1684.8 1175 75.7
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1172 75.3
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1683.7 1170 75.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1677.5 1208 73.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1676.4 1171 75.2
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1676.0 1208 73.6
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1675.2 1194 74.1
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1673.7 1179 75.5
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1672.5 1171 74.6
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1672.1 1173 74.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1671.8 1229 72.0
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1174 74.9
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1668.7 1173 75.5
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1172 75.0
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1667.1 1172 75.0
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1665.2 1171 74.6
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1664.8 1173 73.5
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1664.8 1172 75.4
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1662.1 1176 74.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1661.4 1233 71.8
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1658.3 1214 72.9
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1651.0 1206 73.1
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1645.9 1220 72.6
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1642.1 1179 73.9
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1639.0 1178 72.8
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1636.7 1171 73.2
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1630.9 1232 70.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1629.8 1171 73.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1629.0 1178 72.5
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1627.8 1173 73.2
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1627.5 1177 72.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1627.5 1171 72.8
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1625.5 1177 72.6
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1622.1 1178 72.3
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1620.5 1177 72.6
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1616.3 1175 72.4
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1614.0 1231 69.5
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1613.6 1170 71.9
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1612.8 1176 71.6
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1612.4 1235 70.1
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1163 73.4
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1611.7 1175 72.3
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1175 71.8
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1609.0 1171 72.1
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1607.0 1172 73.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1606.3 1173 72.2
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1605.5 1170 73.2
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1601.6 1172 71.8
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1599.7 1178 71.9
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1594.3 1171 71.7
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1591.6 1180 71.7
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1587.4 1205 70.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1587.0 1180 71.7
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1586.6 1171 72.6
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1585.5 1171 71.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1584.7 1215 69.3
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1583.2 1175 71.1
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1580.5 1180 70.5
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1574.7 1178 71.1
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1573.9 1188 71.4
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1568.5 1171 71.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1567.0 1100 75.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1560.0 1167 71.0
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1560.0 1073 76.4
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1557.0 1149 71.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1546.9 1176 71.6
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1546.9 1174 70.7
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1541.2 1184 69.7
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1536.9 1183 69.3
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1518.1 1177 68.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1516.9 1180 67.5
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1508.8 1182 67.1
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1500.7 1149 69.6
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1494.6 1204 68.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1469.5 1169 65.8
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1466.8 1173 65.8
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1454.1 1109 70.3
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1392.9 1176 64.2
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1388.2 807 89.7
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1380.2 948 76.3
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1350.9 1182 63.6
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1349.7 948 74.7
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1296.6 1036 69.6
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1281.5 971 71.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1270.8 949 72.0
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1203.0 957 68.8
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1201.8 1171 57.5
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1173.3 893 70.9
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1161.4 978 66.6
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1126.3 968 64.6
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1078.2 813 71.6
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 5.5e-303 1044.6 815 69.7
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 6.1e-302 1041.2 1166 53.3
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 6.1e-302 1041.2 805 71.3
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 7.7e-289 997.7 1178 48.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 8.3e-275 951.0 722 71.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.0e-273 946.4 1201 45.5
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.7e-265 919.5 540 84.4
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.8e-237 827.0 604 74.3
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.4e-237 826.6 722 63.2
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.7e-187 661.0 431 77.3
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 1.3e-166 591.7 360 81.9
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 4.0e-160 570.1 307 91.2
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 2.0e-159 567.8 307 90.9
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 4.9e-134 483.4 307 77.2
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.2e-129 468.8 900 38.8
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 6.4e-118 429.9 807 36.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.0e-115 422.5 619 44.3
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.4e-112 412.1 284 75.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 7.6e-103 379.8 1322 28.4
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 4.9e-94 350.5 228 73.7
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 5.3e-80 303.9 201 75.1
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.1e-76 290.4 511 40.1
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.1e-76 290.4 182 77.5
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 3.0e-75 288.1 204 69.1
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 6.7e-75 287.0 278 61.5
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 7.2e-69 266.9 182 72.0
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.8e-64 252.3 144 85.4
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 5.3e-64 250.8 184 69.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 5.9e-63 247.3 256 58.6
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.4e-56 226.1 189 63.5
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 8.8e-51 206.8 128 81.2
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 8.3e-49 200.3 118 86.4
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.0e-47 195.7 152 67.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.5e-45 188.7 137 69.3
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 7.2e-37 160.6 92 88.0
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 2.5e-29 135.6 86 76.7
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.5e-29 135.6 91 71.4
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.5e-29 135.6 91 71.4
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.6e-20 106.3 78 70.5
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.4e-19 103.2 83 65.1
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 1.3e-17 96.7 78 57.7
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 4.1e-16 91.7 47 80.9
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.7e-15 89.0 80 52.5
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 2.7e-15 89.0 59 72.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 2.3e-11 75.9 138 41.3


User provided reference genes

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