Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.3e-47 191.4 100 100.0
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.9e-34 149.1 98 83.7
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 7.1e-34 147.1 98 81.6
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 7.1e-34 147.1 101 80.2
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.2e-33 146.4 100 74.0
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.2e-33 146.4 100 79.0
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.1e-33 145.6 99 75.8
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.0e-32 143.3 102 75.5
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 5.1e-32 141.0 102 76.5
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.7e-32 140.2 94 79.8
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.5e-31 139.4 101 77.2
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.9e-31 139.0 103 74.8
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.5e-31 138.7 100 71.0
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 3.3e-31 138.3 101 72.3
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 3.6e-30 134.8 100 72.0
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.1e-30 133.7 109 67.9
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.8e-29 132.5 94 73.4
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.4e-29 132.1 95 73.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 3.1e-29 131.7 92 79.3
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 3.1e-29 131.7 94 73.4
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.3e-29 131.0 94 72.3
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 5.3e-29 131.0 86 77.9
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-28 129.8 75 82.7
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-28 129.8 74 82.4
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.2e-28 129.8 74 82.4
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.5e-28 129.4 93 72.0
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 2.0e-28 129.0 77 80.5
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 3.4e-28 128.3 93 78.5
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 3.4e-28 128.3 83 80.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.4e-28 127.9 83 81.9
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 9.9e-28 126.7 93 73.1
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.3e-27 126.3 96 68.8
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.7e-27 125.9 95 68.4
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.9e-27 125.2 94 69.1
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.9e-27 125.2 70 87.1
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.9e-27 125.2 92 71.7
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 8.4e-27 123.6 100 71.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.1e-26 123.2 89 73.0
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.1e-26 123.2 92 68.5
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 2.4e-26 122.1 81 72.8
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 2.4e-26 122.1 95 66.3
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 3.2e-26 121.7 93 67.7
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 4.2e-26 121.3 100 64.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.2e-25 119.8 97 66.0
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 1.2e-25 119.8 94 67.0
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.1e-25 119.0 81 69.1
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 3.5e-25 118.2 83 73.5
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.0e-25 117.5 100 62.0
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 6.0e-25 117.5 74 77.0
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.0e-24 116.7 76 69.7
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.3e-24 116.3 74 71.6
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.3e-24 116.3 87 65.5
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.3e-24 116.3 76 72.4
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-24 115.9 100 62.0
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 2.3e-24 115.5 80 70.0
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 3.9e-24 114.8 96 56.2
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 5.1e-24 114.4 92 59.8
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 6.6e-24 114.0 88 62.5
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 6.6e-24 114.0 88 63.6
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 6.6e-24 114.0 73 72.6
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 8.7e-24 113.6 88 65.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 8.7e-24 113.6 72 77.8
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.1e-23 113.2 93 64.5
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.5e-23 112.8 95 61.1
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 93 63.4
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.5e-23 112.8 97 60.8
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.5e-23 112.8 74 70.3
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 83 69.9
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.9e-23 112.5 86 65.1
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.9e-23 112.5 86 65.1
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.9e-23 112.5 88 64.8
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 92 64.1
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 92 64.1
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.9e-23 112.5 92 64.1
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.9e-23 112.5 86 66.3
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.5e-23 112.1 86 66.3
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 3.3e-23 111.7 84 67.9
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.3e-23 111.3 92 63.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 4.3e-23 111.3 70 75.7
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.6e-23 110.9 85 65.9
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 5.6e-23 110.9 64 82.8
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 7.3e-23 110.5 91 64.8
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 7.3e-23 110.5 79 67.1
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 7.3e-23 110.5 97 58.8
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 9.6e-23 110.2 76 67.1
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.3e-22 109.8 74 67.6
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.3e-22 109.8 100 58.0
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.6e-22 109.4 92 63.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.6e-22 108.2 92 58.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 3.6e-22 108.2 73 67.1
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 3.6e-22 108.2 73 71.2
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.6e-22 108.2 97 59.8
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 4.8e-22 107.8 70 68.6
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 4.8e-22 107.8 91 60.4
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 6.2e-22 107.5 99 64.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 8.1e-22 107.1 113 55.8
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-21 106.7 92 65.2
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.1e-21 106.7 65 73.8
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.4e-21 106.3 88 62.5
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.4e-21 106.3 70 67.1
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.4e-21 106.3 70 71.4
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.4e-21 106.3 70 71.4
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.4e-21 106.3 85 63.5
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.4e-21 105.5 70 65.7
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.4e-21 105.5 80 63.8
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 4.0e-21 104.8 85 57.6
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 5.3e-21 104.4 91 61.5
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 5.3e-21 104.4 85 65.9
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 5.3e-21 104.4 76 63.2
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 6.9e-21 104.0 75 62.7
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 2.0e-20 102.4 66 74.2
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 2.0e-20 102.4 80 62.5
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.5e-20 101.3 71 60.6
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 4.5e-20 101.3 66 74.2
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 7.6e-20 100.5 67 70.1
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 7.6e-20 100.5 64 68.8
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.3e-19 99.8 83 65.1
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.3e-19 99.8 66 74.2
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.3e-19 99.8 66 74.2
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.3e-19 99.8 64 71.9
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.7e-19 99.4 79 62.0
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.2e-19 99.0 67 67.2
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.2e-19 99.0 65 73.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.2e-19 99.0 65 73.8
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.8e-19 98.2 67 71.6
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 3.8e-19 98.2 88 54.5
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.8e-19 98.2 64 70.3
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.9e-19 97.8 91 57.1
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 6.4e-19 97.4 69 66.7
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 6.4e-19 97.4 69 66.7
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 8.4e-19 97.1 64 73.4
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.4e-18 96.3 68 61.8
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-17 92.8 125 47.2
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.6e-17 92.8 71 63.4
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.0e-16 88.6 81 55.6
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.0e-16 88.6 77 58.4
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.5e-15 86.3 63 68.3
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 2.5e-15 85.5 69 56.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.3e-15 85.1 78 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.6e-15 83.6 64 60.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 9.6e-15 83.6 77 55.8
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.3e-14 83.2 63 63.5
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.3e-14 83.2 81 50.6
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 2.1e-14 82.4 66 56.1
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-13 80.1 56 66.1
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.4e-13 79.7 65 58.5
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.1e-13 78.6 56 64.3
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.0e-13 78.2 56 64.3
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 2.0e-12 75.9 88 50.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.3e-11 73.2 63 50.8
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.2e-11 72.4 60 58.3
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.4e-10 69.7 50 64.0
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 4.2e-10 68.2 36 80.6
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 2.1e-09 65.9 72 45.8
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-06 55.8 56 62.5
Cre12.g515150 Chlamydomonas reinhardtii HOM05D004571 ORTHO05D005334 6.2e-06 54.3 69 39.1


User provided reference genes

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