Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.5e-239 832.4 422 100.0
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.8e-70 270.8 424 42.9
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 3.0e-65 253.4 449 39.9
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.9e-64 250.8 438 41.3
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 2.8e-63 246.9 444 39.6
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 4.0e-62 243.0 430 39.5
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.5e-61 241.1 430 39.3
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 7.5e-61 238.8 430 39.1
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 2.9e-60 236.9 358 43.3
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.1e-56 224.9 427 38.9
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.5e-56 224.6 429 38.2
Aa31sc309G40 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.2e-53 214.9 286 50.7
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 2.4e-51 207.2 374 40.9
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.6e-48 196.1 408 37.0
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.4e-38 164.1 436 33.0
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 2.9e-36 157.1 328 35.7
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 4.9e-36 156.4 209 44.0
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 3.2e-35 153.7 247 37.7
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 4.2e-35 153.3 363 33.6
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.6e-34 151.4 305 37.0
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 4.6e-34 149.8 233 39.9
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.0e-34 149.4 338 36.4
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.9e-34 149.1 479 30.7
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.3e-33 148.3 302 38.4
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.8e-33 147.9 335 35.2
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 8.7e-33 145.6 347 33.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.5e-32 144.8 182 45.6
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.9e-32 144.4 212 41.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 2.5e-32 144.1 200 41.0
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.3e-32 143.7 211 41.2
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 4.3e-32 143.3 331 34.7
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 4.3e-32 143.3 296 37.5
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 9.6e-32 142.1 335 34.9
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 1.3e-31 141.7 331 34.7
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.6e-31 141.4 200 39.5
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.6e-31 141.4 200 39.5
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.6e-31 141.4 284 36.3
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.1e-31 141.0 243 37.4
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 6.2e-31 139.4 202 41.6
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.8e-30 137.9 225 39.1
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 9.0e-30 135.6 322 32.6
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 2.0e-29 134.4 273 37.0
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 6.4e-28 129.4 239 34.7
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 4.6e-26 123.2 206 38.3
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 6.7e-25 119.4 218 34.4
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 2.8e-23 114.0 218 31.7
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.4e-22 110.9 110 49.1
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.2e-21 108.6 168 36.9
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.4e-21 107.1 381 25.7
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 4.5e-21 106.7 405 28.9
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.2e-20 104.4 193 33.7
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 3.8e-20 103.6 206 35.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 4.9e-20 103.2 362 26.8
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 8.4e-20 102.4 208 37.5
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.2e-19 100.1 271 29.9
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 4.2e-19 100.1 125 38.4
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 5.5e-19 99.8 195 34.9
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 9.3e-19 99.0 319 30.1
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-18 98.2 396 25.3
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 3.5e-18 97.1 346 28.0
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.3e-17 95.1 393 27.2
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.3e-17 95.1 193 32.6
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.3e-17 94.4 107 43.9
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.0e-17 94.0 215 35.8
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 3.0e-17 94.0 197 31.5
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.1e-16 92.0 216 35.2
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.5e-16 91.7 288 29.9
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.5e-16 91.7 204 33.8
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.7e-16 89.7 215 35.3
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 7.4e-16 89.4 108 40.7
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 9.7e-16 89.0 430 22.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 9.7e-16 89.0 182 34.1
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 9.7e-16 89.0 110 40.0
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.3e-15 88.6 163 33.7
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.3e-15 88.6 383 28.2
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.6e-15 88.2 179 33.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.2e-15 87.8 212 32.5
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.7e-15 87.0 376 24.2
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.7e-15 87.0 231 29.9
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 3.7e-15 87.0 161 34.2
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 3.7e-15 87.0 229 31.9
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 3.7e-15 87.0 231 30.3
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 4.8e-15 86.7 221 32.1
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.8e-15 86.7 321 27.7
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 6.3e-15 86.3 119 40.3
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 8.2e-15 85.9 161 32.3
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.8e-14 84.7 312 30.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.4e-14 84.3 173 35.3
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.4e-14 84.3 119 36.1
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 2.4e-14 84.3 374 26.2
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 3.1e-14 84.0 159 33.3
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.3e-14 83.2 166 30.1
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 5.3e-14 83.2 166 30.1
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 5.3e-14 83.2 166 30.1
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.9e-14 82.8 212 33.0
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 9.0e-14 82.4 271 29.2
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.5e-13 81.6 108 38.0
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.4e-13 80.5 106 38.7
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.4e-13 80.5 108 38.9
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.4e-13 80.5 133 39.8
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 5.9e-13 79.7 136 38.2
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 5.9e-13 79.7 173 28.9
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 5.9e-13 79.7 105 35.2
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 7.7e-13 79.3 217 30.0
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 7.7e-13 79.3 213 30.5
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.0e-12 79.0 380 23.4
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.0e-12 79.0 161 34.2
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.0e-12 79.0 109 33.9
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.7e-12 78.2 405 25.7
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.7e-12 78.2 173 31.8
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.7e-12 78.2 477 24.7
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.8e-12 77.0 105 35.2
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.0e-12 76.6 109 33.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 6.5e-12 76.3 233 27.5
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 6.5e-12 76.3 151 33.8
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.5e-12 76.3 401 22.9
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.1e-11 75.5 131 35.1
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.1e-11 75.5 105 32.4
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 1.1e-11 75.5 423 21.7
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.1e-11 75.5 170 31.2
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-11 75.5 161 31.1
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.4e-11 75.1 117 37.6
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.9e-11 74.7 214 29.9
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.9e-11 74.7 117 32.5
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.5e-11 74.3 105 38.1
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.2e-11 73.9 161 31.1
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 3.2e-11 73.9 384 23.7
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.5e-11 73.2 102 39.2
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 7.2e-11 72.8 412 24.5
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 9.4e-11 72.4 130 33.8
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.6e-10 71.6 149 29.5
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.1e-10 71.2 113 33.6
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.1e-10 71.2 136 31.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.1e-10 71.2 108 37.0
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 4.6e-10 70.1 115 37.4
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 4.6e-10 70.1 117 35.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 6.1e-10 69.7 180 28.3
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 7.9e-10 69.3 132 36.4
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 7.9e-10 69.3 137 30.7
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 7.9e-10 69.3 112 34.8
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 1.0e-09 68.9 115 37.4
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.4e-09 68.6 404 22.3
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.4e-09 68.6 113 34.5
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.8e-09 68.2 169 29.6
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 3.0e-09 67.4 147 33.3
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.0e-09 67.4 308 25.3
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 5.1e-09 66.6 190 28.9
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 6.7e-09 66.2 91 40.7
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 6.7e-09 66.2 168 31.5
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 6.7e-09 66.2 380 25.5
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 8.8e-09 65.9 169 29.0
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.8e-09 65.9 122 33.6
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.5e-08 65.1 225 28.0
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 1.5e-08 65.1 163 30.7
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 2.5e-08 64.3 231 29.0
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 3.3e-08 63.9 181 26.5
Aqoxy3G01606 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 4.3e-08 63.5 101 36.6
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 4.3e-08 63.5 157 31.2
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.3e-08 63.5 130 32.3
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 4.3e-08 63.5 112 32.1
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 5.7e-08 63.2 328 27.1
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 5.7e-08 63.2 74 40.5
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.7e-08 63.2 155 30.3
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.2e-07 61.2 363 24.0
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.8e-07 60.8 392 22.4
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 3.7e-07 60.5 37 62.2
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 4.8e-07 60.1 110 30.0
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 4.8e-07 60.1 100 33.0
Aqoxy1G03360 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 8.2e-07 59.3 101 35.6
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 1.1e-06 58.9 118 32.2
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.1e-06 58.9 109 28.4
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.1e-06 58.9 106 34.0
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 1.4e-06 58.5 82 40.2
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 3.1e-06 57.4 141 31.9
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 3.1e-06 57.4 195 27.7
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 5.3e-06 56.6 362 25.1
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 6.9e-06 56.2 99 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 9.1e-06 55.8 104 30.8


User provided reference genes

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