Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 1.0e-53 213.4 125 100.0
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 2.0e-33 146.0 123 73.2
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 9.8e-33 143.7 123 74.0
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 9.8e-33 143.7 123 74.0
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 1.3e-32 143.3 123 73.2
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 6.3e-32 141.0 123 72.4
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-31 139.8 123 73.2
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 1.8e-31 139.4 119 74.8
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 2.4e-31 139.0 121 71.9
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.2e-30 136.7 123 71.5
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 2.7e-30 135.6 115 74.8
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 4.5e-30 134.8 123 70.7
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 5.9e-30 134.4 114 74.6
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 5.9e-30 134.4 118 72.9
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 6.6e-29 131.0 123 71.5
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 2.5e-28 129.0 114 71.9
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 5.6e-28 127.9 123 69.1
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 5.6e-28 127.9 123 69.1
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 1.1e-23 113.6 123 61.8
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 8.6e-13 77.4 87 65.5
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 2.5e-12 75.9 137 48.9
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 2.5e-12 75.9 137 48.9
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 2.5e-12 75.9 82 69.5
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 3.3e-12 75.5 137 48.9
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 4.3e-12 75.1 134 45.5
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 7.3e-12 74.3 126 44.4
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 2.8e-11 72.4 122 53.3
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 3.6e-11 72.0 82 64.6
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 3.6e-11 72.0 133 49.6
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 4.7e-11 71.6 82 64.6
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 4.7e-11 71.6 130 50.0
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 6.2e-11 71.2 87 58.6
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 8.1e-11 70.9 82 52.4
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 8.1e-11 70.9 80 65.0
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 99 56.6
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 1.8e-10 69.7 79 62.0
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 1.8e-10 69.7 134 47.0
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 3.1e-10 68.9 127 43.3
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 3.1e-10 68.9 111 51.4
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 3.1e-10 68.9 84 59.5
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 4.0e-10 68.6 86 61.6
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 5.2e-10 68.2 77 66.2
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 5.2e-10 68.2 77 66.2
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 5.2e-10 68.2 82 51.2
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 6.8e-10 67.8 85 63.5
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 6.8e-10 67.8 121 43.0
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.2e-09 67.0 83 56.6
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 1.2e-09 67.0 84 61.9
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 1.5e-09 66.6 136 48.5
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 2.0e-09 66.2 118 46.6
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 2.0e-09 66.2 82 50.0
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 2.0e-09 66.2 82 58.5
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 3.4e-09 65.5 121 42.1
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 3.4e-09 65.5 124 49.2
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 4.4e-09 65.1 79 62.0
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 5.8e-09 64.7 82 59.8
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 5.8e-09 64.7 115 40.9
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 5.8e-09 64.7 129 45.0
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 7.5e-09 64.3 137 46.0
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 9.9e-09 63.9 116 46.6
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 9.9e-09 63.9 114 52.6
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 9.9e-09 63.9 82 59.8
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 9.9e-09 63.9 125 53.6
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.3e-08 63.5 88 61.4
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 1.3e-08 63.5 125 42.4
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 1.3e-08 63.5 139 39.6
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 1.3e-08 63.5 123 43.1
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.7e-08 63.2 123 52.8
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 2.2e-08 62.8 145 44.1
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 2.9e-08 62.4 121 50.4
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 3.7e-08 62.0 87 47.1
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 4.9e-08 61.6 39 87.2
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 4.9e-08 61.6 38 86.8
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 6.4e-08 61.2 75 65.3
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 6.4e-08 61.2 36 94.4
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 6.4e-08 61.2 116 52.6
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 8.3e-08 60.8 80 61.2
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 8.3e-08 60.8 86 52.3
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 8.3e-08 60.8 112 50.9
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 8.3e-08 60.8 78 59.0
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.9e-07 59.7 80 60.0
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 1.9e-07 59.7 38 86.8
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 2.4e-07 59.3 78 59.0
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 3.2e-07 58.9 96 52.1
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 7.1e-07 57.8 83 55.4
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 9.2e-07 57.4 114 47.4
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 9.2e-07 57.4 38 81.6
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 9.2e-07 57.4 48 72.9
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 9.2e-07 57.4 38 81.6
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.6e-06 56.6 116 49.1
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 2.1e-06 56.2 38 78.9
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 2.1e-06 56.2 128 46.9
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 2.1e-06 56.2 134 45.5
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 3.5e-06 55.5 82 56.1
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 4.6e-06 55.1 130 48.5
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 7.8e-06 54.3 79 55.7


User provided reference genes

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