Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 6.1e-109 397.5 204 100.0
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 5.2e-84 314.7 192 83.9
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.2e-82 309.3 193 83.9
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 1.9e-81 306.2 192 80.7
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.7e-80 302.4 192 79.7
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.3e-78 295.0 187 81.3
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 5.6e-78 294.7 192 79.2
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 5.6e-78 294.7 192 79.7
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.2e-77 293.5 193 77.7
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.1e-76 288.9 188 80.3
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 3.1e-76 288.9 187 80.2
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.3e-71 273.5 200 68.5
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.5e-70 270.0 190 72.1
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.6e-61 240.0 183 70.5
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.1e-60 237.3 152 78.9
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 4.0e-60 235.3 192 66.7
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 6.9e-60 234.6 145 80.7
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 3.4e-59 232.3 145 80.7
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.6e-56 223.4 197 57.4
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.3e-55 220.3 197 58.4
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 4.3e-54 215.3 196 58.7
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 5.6e-54 214.9 175 64.0
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 5.6e-54 214.9 175 64.0
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 7.4e-54 214.5 196 56.6
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 2.1e-53 213.0 188 58.0
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.7e-53 212.2 190 57.9
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 2.4e-52 209.5 180 59.4
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 3.1e-52 209.1 178 65.7
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 3.1e-52 209.1 178 65.7
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 9.0e-52 207.6 187 57.2
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 5.8e-51 204.9 193 57.5
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 7.6e-51 204.5 180 58.9
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.9e-50 202.6 190 57.4
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 3.8e-50 202.2 193 57.0
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 6.5e-50 201.4 186 58.6
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.9e-49 199.9 186 57.0
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 5.5e-49 198.4 166 60.8
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 9.3e-49 197.6 165 60.0
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 9.3e-49 197.6 184 53.8
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 9.3e-49 197.6 188 55.3
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 9.3e-49 197.6 197 53.3
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.7e-48 196.1 197 55.8
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 2.7e-48 196.1 189 54.5
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 6.0e-48 194.9 202 52.5
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.8e-47 193.4 186 55.9
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.8e-47 193.4 162 60.5
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.8e-47 193.4 183 53.0
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.3e-47 193.0 162 60.5
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.3e-47 193.0 189 54.0
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.3e-47 193.0 188 58.0
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 3.0e-47 192.6 190 56.3
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 5.1e-47 191.8 184 56.5
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 5.1e-47 191.8 166 61.4
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 6.7e-47 191.4 173 54.3
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 6.7e-47 191.4 183 56.8
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.1e-46 190.7 184 53.8
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 1.1e-46 190.7 170 58.8
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.3e-46 189.1 166 56.6
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 4.3e-46 188.7 167 57.5
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.3e-45 187.2 159 61.0
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 3.7e-45 185.7 173 57.2
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 3.7e-45 185.7 186 54.3
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.1e-44 184.1 154 61.0
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.1e-44 184.1 154 60.4
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.4e-44 183.7 189 49.7
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 1.8e-44 183.3 181 56.4
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 2.4e-44 183.0 180 51.7
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.1e-44 182.6 138 70.3
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 4.1e-44 182.2 187 53.5
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 4.1e-44 182.2 180 53.9
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 9.0e-44 181.0 187 53.5
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.5e-43 180.3 164 57.3
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.0e-43 179.9 184 50.0
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 7.6e-43 177.9 187 52.9
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.0e-42 177.6 186 50.5
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.2e-42 176.4 176 56.8
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 2.2e-42 176.4 165 56.4
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 5.0e-42 175.3 184 49.5
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 5.0e-42 175.3 183 52.5
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 8.5e-42 174.5 144 63.2
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.1e-41 174.1 186 51.6
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.4e-41 173.7 146 63.7
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-41 173.3 161 56.5
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.9e-41 173.3 202 47.5
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 3.2e-41 172.6 182 51.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 4.2e-41 172.2 179 49.7
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 4.2e-41 172.2 159 55.3
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 9.3e-41 171.0 185 51.9
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.6e-40 170.2 271 39.5
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 2.1e-40 169.9 183 51.9
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 3.6e-40 169.1 164 53.0
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 7.9e-40 167.9 165 55.2
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.8e-39 166.8 141 60.3
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.8e-39 166.8 180 47.8
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.8e-39 166.8 173 51.4
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 2.3e-39 166.4 183 50.8
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 3.0e-39 166.0 141 60.3
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 5.1e-39 165.2 146 58.2
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 5.1e-39 165.2 157 59.2
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 4.3e-38 162.2 186 49.5
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 4.3e-38 162.2 186 49.5
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 4.3e-38 162.2 186 49.5
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.2e-37 157.9 151 62.9
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.1e-36 157.5 172 50.0
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.4e-36 156.4 181 48.6
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 4.5e-35 152.1 164 50.0
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 3.8e-34 149.1 136 56.6
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 8.5e-34 147.9 187 45.5
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 4.2e-33 145.6 123 59.3
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 4.6e-32 142.1 118 60.2
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.8e-29 132.9 145 52.4
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 5.3e-28 128.6 145 47.6
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 2.6e-27 126.3 159 44.0
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 3.4e-27 125.9 119 58.0
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 5.9e-27 125.2 130 48.5
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.0e-26 124.4 183 38.3
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 4.4e-22 109.0 98 57.1
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 7.4e-22 108.2 113 53.1
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 2.8e-21 106.3 148 43.9
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 4.1e-20 102.4 118 55.9
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 4.5e-19 99.0 59 72.9
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 5.9e-19 98.6 184 35.9
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.3e-18 97.4 221 34.4
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 2.9e-18 96.3 119 44.5
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.2e-17 92.4 77 57.1
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.6e-16 90.5 91 52.7
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.7e-13 79.3 87 50.6
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 3.1e-12 76.3 72 54.2
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 2.2e-10 70.1 74 52.7
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 2.1e-08 63.5 166 32.5
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-07 60.5 110 38.2
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.5e-06 57.4 76 40.8
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 2.0e-06 57.0 43 62.8
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 2.0e-06 57.0 43 62.8
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 2.0e-06 57.0 94 43.6


User provided reference genes

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