Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 2.0e-62 242.3 121 100.0
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.2e-48 196.4 121 81.0
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 1.4e-47 193.0 121 81.8
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 5.7e-46 187.6 121 81.0
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 1.6e-43 179.5 122 77.0
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 4.5e-43 177.9 121 77.7
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 5.9e-43 177.6 107 84.1
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 5.9e-43 177.6 107 84.1
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.9e-42 175.3 121 71.9
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 3.8e-42 174.9 107 82.2
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 8.5e-42 173.7 121 76.9
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 2.5e-41 172.2 107 82.2
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 5.4e-36 154.5 108 70.4
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 7.0e-36 154.1 110 68.2
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.0e-34 150.2 112 69.6
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.9e-33 146.0 110 66.4
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 3.3e-33 145.2 116 64.7
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 9.5e-33 143.7 110 66.4
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.2e-32 143.3 110 65.5
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 3.6e-32 141.7 116 62.1
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 3.0e-31 138.7 113 63.7
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 4.0e-31 138.3 111 62.2
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 4.9e-29 131.3 112 58.9
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 1.1e-28 130.2 112 58.0
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 2.0e-27 125.9 93 66.7
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 7.8e-27 124.0 103 60.2
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 6.6e-26 120.9 87 70.1
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 6.6e-26 120.9 109 58.7
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 8.6e-26 120.6 96 62.5
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.5e-25 119.0 109 56.9
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 5.6e-25 117.9 109 56.0
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 5.6e-25 117.9 107 60.7
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 5.6e-25 117.9 105 56.2
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 5.6e-25 117.9 102 58.8
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 7.3e-25 117.5 119 53.8
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 7.3e-25 117.5 107 57.0
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 7.3e-25 117.5 105 57.1
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 9.5e-25 117.1 105 57.1
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 1.2e-24 116.7 105 57.1
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.2e-24 116.7 105 56.2
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.2e-24 116.7 102 57.8
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.6e-24 115.2 92 64.1
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 3.6e-24 115.2 111 57.7
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 3.6e-24 115.2 110 53.6
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 4.7e-24 114.8 107 54.2
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 6.2e-24 114.4 101 57.4
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 8.0e-24 114.0 105 57.1
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.0e-23 113.6 90 65.6
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.0e-23 113.6 111 55.0
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 1.4e-23 113.2 103 58.3
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.8e-23 112.8 112 52.7
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 4.0e-23 111.7 94 60.6
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 5.2e-23 111.3 86 62.8
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 5.2e-23 111.3 92 59.8
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 6.8e-23 110.9 99 57.6
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 1.2e-22 110.2 90 61.1
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 3.4e-22 108.6 92 56.5
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 4.4e-22 108.2 94 60.6
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 1.3e-21 106.7 94 60.6
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 1.7e-21 106.3 94 56.4
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.7e-21 106.3 110 50.0
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 2.2e-21 105.9 105 49.5
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 2.2e-21 105.9 88 62.5
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 2.9e-21 105.5 94 54.3
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 4.9e-21 104.8 108 50.9
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 6.4e-21 104.4 110 49.1
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 5.4e-20 101.3 99 52.5
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.2e-19 100.1 109 55.0
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 3.5e-19 98.6 90 56.7
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 4.6e-19 98.2 85 64.7
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 1.0e-18 97.1 91 54.9
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.0e-18 97.1 106 50.9
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.3e-18 96.7 92 57.6
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 3.0e-18 95.5 89 56.2
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 8.6e-18 94.0 90 55.6
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 8.6e-18 94.0 85 52.9
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.9e-17 92.8 89 56.2
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 2.5e-17 92.4 99 52.5
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 5.6e-17 91.3 92 53.3
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 5.6e-17 91.3 101 51.5
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 5.2e-15 84.7 88 52.3
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 2.0e-14 82.8 106 43.4
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 3.7e-13 78.6 92 46.7
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 4.9e-13 78.2 88 51.1
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.1e-12 77.0 83 50.6
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 9.2e-12 73.9 81 49.4
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 2.1e-11 72.8 95 49.5


User provided reference genes

Program Settings